On Fri, 18 Nov 2022 16:45:14 -0500 Rob Kudyba <rk3...@columbia.edu> wrote:
> Here is where the error occurs in make install: > [...] > installing packages ... > building HTML index ... > /path/to/R-4.2.2/bin/exec/R: error while loading shared libraries: > libgfortran.so.5: cannot open shared object file: No such file or > directory make[2]: *** [install] Error 127 > make[2]: Leaving directory `/path/to/R-4.2.2/src/library' > make[1]: *** [install] Error 1 > make[1]: Leaving directory `/path/to/rk3199/R-4.2.2/src' > make: *** [install] Error 1 It should be possible to run R without installing it, as /path/to/R-4.2.2/bin/R (strictly speaking, as bin/R under the build directory, if you're building R separately from the source tree). Does it work? Does /path/to/R-4.2.2/bin/R -d ldd give you any useful information? Can you use strace -f -e openat /path/to/R-4.2.2/bin/R to confirm that the dynamic library loader is looking in /path/to/gcc-11.2/lib64 for the shared objects? If /path/to/gcc-11.2/lib64 is missing from both /etc/ld.so.conf and the environment variable LD_LIBRARY_PATH and you don't want to set it manually every time, you can either edit /path/to/R-4.2.2/etc/ldpaths or pass the -Wl,-rpath=/path/to/gcc-11.2/lib64 flag to the linker. > During make I see this error with Java: This error is not fatal. rJava won't work, but the rest of R should be fine. -- Best regards, Ivan ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
