Hm, Maybe if you change > C(-7, 7) Error in C(-7, 7) : object not interpretable as a factor
to > c(-7, 7) [1] -7 7 Cheers Petr S pozdravem | Best Regards RNDr. Petr PIKAL Vedoucí Výzkumu a vývoje | Research Manager PRECHEZA a.s. nábř. Dr. Edvarda Beneše 1170/24 | 750 02 Přerov | Czech Republic Tel: +420 581 252 256 | GSM: +420 724 008 364 petr.pi...@precheza.cz | www.precheza.cz Osobní údaje: Informace o zpracování a ochraně osobních údajů obchodních partnerů PRECHEZA a.s. jsou zveřejněny na: https://www.precheza.cz/zasady-ochrany-osobnich-udaju/ | Information about processing and protection of business partner's personal data are available on website: https://www.precheza.cz/en/personal-data-protection-principles/ Důvěrnost: Tento e-mail a jakékoliv k němu připojené dokumenty jsou důvěrné a podléhají tomuto právně závaznému prohlášení o vyloučení odpovědnosti: https://www.precheza.cz/01-dovetek/ | This email and any documents attached to it may be confidential and are subject to the legally binding disclaimer: https://www.precheza.cz/en/01-disclaimer/ > -----Original Message----- > From: R-help <r-help-boun...@r-project.org> On Behalf Of pooja sinha > Sent: Tuesday, October 5, 2021 2:20 PM > To: r-help mailing list <r-help@r-project.org> > Subject: [R] Need in formatting data for circos plot > > Hi All, > > I have gene expression data with differential fold change value and the file > looks like as below: > Chrom start_pos end_pos value > 14 20482867 20496901 2.713009346 > 4 123712710 123718202 -2.20797815 > 13 80883384 80896042 1.646405782 > 16 48842551 48844461 -1.636002557 > 17 28399094 28517527 1.033066311 > 9 31846044 31913462 -1.738549101 > 1 45311538 45349706 -1.360867536 > I wrote a code in R but it is giving error so I need help in trouble > shooting: > library(circlize) > library(gtools) > library(dplyr) > circos.initializeWithIdeogram(species = "mm10") > circos.par("track.height"=0.20) > > circos.genomicTrackPlotRegion(data = db_tr,ylim = C(-7, 7), numeric.column > = 4, > panel.fun = function(region,value,...) { > cond <- value[,1] < 0.0 > circos.genomicPoints(region[cond,], > value[cond,], pch = ".", cex = 0.1, > col = "khaki4") > circos.genomicPoints(region[!cond,], > value[!cond,], pch = ".", cex = 0.1, > col = "indianred") > }) > Error is : Error in C(-7, 7) : object not interpretable as a factor > > Please help as I am new to circos plot and tried a lot. The file is also attached > here. > > Thanks, > Puja > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting- > guide.html > and provide commented, minimal, self-contained, reproducible code.
______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
