You may need to use smaller data. Anyway, read the Posting Guide, which says
for contributed packages to contact the package maintainer
?maintainer
On May 28, 2021 11:55:04 AM PDT, Gossaye Hailu <gossay...@gmail.com> wrote:
>I am doing phylogenetic analysis of ecological community data set using
>Picante package to find out PD, MPD, MNTD
>I have run the following arguments
>library(picante)
>>tree4.phylotree<-read.tree("phylojune2016.edit.phy")
>>tree4.phy<-read.csv("june2016.matrix.csv",sep=",",header =
>TRUE,row.names
>= 1)
>>tree4.out<-pd(tree4.phy,tree4.phylotree,include.root = FALSE)
>>tree4.out[,3]<-mpd(tree4.phy,cophenetic(tree4.phylotree))
>>tree4.out[,4]<-mntd(tree4.phy,cophenetic(tree4.phylotree))
>>names(tree4.out)[3:4]<-c("MPD","MNTD")
>
>When I randomize the matrix 999 times the following Error term appears
>>tree4.mpd<-ses.mpd(tree4.phy,cophenetic(tree4.phylotree),runs = 999)
>
>Error: C stack usage 15923904 is too close to the limit
>
>How can I solve this error please? I will highly appreciate your help!
>
> [[alternative HTML version deleted]]
>
>______________________________________________
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>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.
--
Sent from my phone. Please excuse my brevity.
______________________________________________
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
