I have no familiarity with these packages but I did a search in CRAN on api_create and found it is defined in the plotly package. I then confirmed that the seurat package does reference plotly.
You might try installing the plotly package before trying to install seurat. HTH, Eric On Sat, Mar 20, 2021 at 6:05 PM Jiefei Wang <szwj...@gmail.com> wrote: > Hi Miso, > > Have you tried to install Seurat from CRAN? What you were using is the > GitHub version of the package and has been actively updating, so the > problem might be from the package. > > Best, > Jiefei > > On Sat, Mar 20, 2021 at 10:32 PM Miso Na <m...@jhu.edu> wrote: > > > Dear helpers, > > > > Although I uninstalled and reinstalled R more than 3 times to delete the > > error in api_create, it did not work. The error is representing on the > very > > first page on R consol. > > Error: could not find function "api_create" > > > > I guess this error makes impossible to install library 'SCMAP', > > 'SingleCellExperiment' or 'Seurat'. > > For example, I got this error when I tried to install those libraries. > > Installing package into 'C:/Users/user/Documents/R/win-library/4.0' > > (as 'lib' is unspecified) > > Error: could not find function "api_create" > > Execution halted > > Error: Failed to install 'Seurat' from GitHub: > > (converted from warning) installation of package > > > 'C:/Users/user/AppData/Local/Temp/RtmpKYL3Pe/file2c2c6cb0766e/Seurat_4.0.1.tar.gz' > > had non-zero exit status > > > > > > My sessionInfo is here! > > > > > sessionInfo() > > R version 4.0.4 (2021-02-15) > > Platform: x86_64-w64-mingw32/x64 (64-bit) > > Running under: Windows 10 x64 (build 19041) > > > > Matrix products: default > > > > locale: > > [1] LC_COLLATE=English_United States.1252 > > [2] LC_CTYPE=English_United States.1252 > > [3] LC_MONETARY=English_United States.1252 > > [4] LC_NUMERIC=C > > [5] LC_TIME=English_United States.1252 > > system code page: 949 > > > > attached base packages: > > [1] stats graphics grDevices utils datasets methods base > > > > loaded via a namespace (and not attached): > > [1] compiler_4.0.4 > > > > Thanks for your help! > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
