Hallo
I've been using R and R commander (Rcmdr) for some years, never had
problems. I'm on Xubuntu 16.04. Yesterday I updated R from 3.4.4 to 3.6.1
and all sorts of problems occurred. Firstly I completely removed R from my
system, including old directories (with some hiccups, I must admit). Then I
installed R and R-dev without issues. Had some issues installing Rcmdr, but
in the end I met all the requirements and installed all the requested
packages, including rgl and a few others that were requested upon first
launching Rcmdr. After that, no more error messages. However, whenever I
launch R commander I get these lines, which don't mention any problem, but
the GUI won't launch.
> library(Rcmdr)
Carico il pacchetto richiesto: splines
Carico il pacchetto richiesto: RcmdrMisc
Carico il pacchetto richiesto: car
Carico il pacchetto richiesto: carData
Carico il pacchetto richiesto: sandwich
Carico il pacchetto richiesto: effects
Registered S3 methods overwritten by 'lme4':
method from
cooks.distance.influence.merMod car
influence.merMod car
dfbeta.influence.merMod car
dfbetas.influence.merMod car
lattice theme set by effectsTheme()
See ?effectsTheme for details.
After seeing, if I type library(Rcmdr) again, nothing happens.
I installed Hmisc, leaps and aplpack, as these were indicated as possible
solutions, but to no avail.
This is the output of sys.info and sessionInfo
> Sys.info()
sysname
"Linux"
release
"4.4.0-170-generic"
version
"#199-Ubuntu SMP Thu Nov 14 01:45:04 UTC 2019"
nodename
"me-HP430"
machine
"x86_64"
login
"me"
user
"me"
effective_user
"me"
> sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.6 LTS
Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0
Random number generation:
RNG: Mersenne-Twister
Normal: Inversion
Sample: Rounding
locale:
[1] LC_CTYPE=it_IT.UTF-8 LC_NUMERIC=C
[3] LC_TIME=it_IT.UTF-8 LC_COLLATE=it_IT.UTF-8
[5] LC_MONETARY=it_IT.UTF-8 LC_MESSAGES=it_IT.UTF-8
[7] LC_PAPER=it_IT.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] splines stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] effects_4.1-4 RcmdrMisc_2.5-1 sandwich_2.5-1 car_3.0-5
[5] carData_3.0-3
loaded via a namespace (and not attached):
[1] Rcpp_1.0.3 lattice_0.20-38 tcltk2_1.2-11
[4] class_7.3-15 zoo_1.8-6 relimp_1.0-5
[7] zeallot_0.1.0 digest_0.6.23 R6_2.4.1
[10] cellranger_1.1.0 backports_1.1.5 acepack_1.4.1
[13] survey_3.36 e1071_1.7-3 ggplot2_3.2.1
[16] pillar_1.4.2 rlang_0.4.2 lazyeval_0.2.2
[19] curl_4.3 readxl_1.3.1 minqa_1.2.4
[22] rstudioapi_0.10 data.table_1.12.6 nloptr_1.2.1
[25] rpart_4.1-15 Matrix_1.2-18 checkmate_1.9.4
[28] lme4_1.1-21 stringr_1.4.0 foreign_0.8-72
[31] htmlwidgets_1.5.1 munsell_0.5.0 compiler_3.6.1
[34] xfun_0.11 pkgconfig_2.0.3 base64enc_0.1-3
[37] mitools_2.4 htmltools_0.4.0 tcltk_3.6.1
[40] nnet_7.3-12 tibble_2.1.3 gridExtra_2.3
[43] htmlTable_1.13.3 Hmisc_4.3-0 rio_0.5.16
[46] Rcmdr_2.6-1 crayon_1.3.4 MASS_7.3-51.4
[49] grid_3.6.1 DBI_1.0.0 nlme_3.1-142
[52] gtable_0.3.0 lifecycle_0.1.0 magrittr_1.5
[55] scales_1.1.0 zip_2.0.4 stringi_1.4.3
[58] latticeExtra_0.6-28 vctrs_0.2.0 boot_1.3-23
[61] openxlsx_4.1.3 nortest_1.0-4 Formula_1.2-3
[64] RColorBrewer_1.1-2 tools_3.6.1 forcats_0.4.0
[67] hms_0.5.2 abind_1.4-5 survival_3.1-8
[70] colorspace_1.4-1 cluster_2.1.0 knitr_1.26
[73] haven_2.2.0
This is the list of installed packages:
Package Version
aplpack 1.3.3
Hmisc 4.3-0
leaps 3.0
Rcmdr 2.6-1
abind 1.4-5
acepack 1.4.1
aplpack 1.3.3
arm 1.10-1
assertthat 0.2.1
backports 1.1.5
base64enc 0.1-3
BH 1.69.0-1
callr 3.3.2
car 3.0-5
carData 3.0-3
cellranger 1.1.0
checkmate 1.9.4
cli 1.1.0
clipr 0.7.0
coda 0.19-3
colorspace 1.4-1
crayon 1.3.4
crosstalk 1.0.0
curl 4.3
data.table 1.12.6
DBI 1.0.0
digest 0.6.23
e1071 1.7-3
effects 4.1-4
ellipsis 0.3.0
estimability 1.3
evaluate 0.14
fansi 0.4.0
farver 2.0.1
fastmap 1.0.1
forcats 0.4.0
Formula 1.2-3
ggplot2 3.2.1
glue 1.3.1
gridExtra 2.3
gtable 0.3.0
haven 2.2.0
highr 0.8
Hmisc 4.3-0
hms 0.5.2
htmlTable 1.13.3
htmltools 0.4.0
htmlwidgets 1.5.1
httpuv 1.5.2
jsonlite 1.6
knitr 1.26
labeling 0.3
later 1.0.0
latticeExtra 0.6-28
lazyeval 0.2.2
leaps 3.0
lifecycle 0.1.0
lme4 1.1-21
lmtest 0.9-37
magrittr 1.5
manipulateWidget 0.10.0
maptools 0.9-9
markdown 1.1
matrixcalc 1.0-3
MatrixModels 0.4-1
mi 1.0
mime 0.7
miniUI 0.1.1.1
minqa 1.2.4
mitools 2.4
multcomp 1.4-10
munsell 0.5.0
mvtnorm 1.0-11
nloptr 1.2.1
nortest 1.0-4
numDeriv 2016.8-1.1
openxlsx 4.1.3
pbkrtest 0.4-7
pillar 1.4.2
pkgconfig 2.0.3
plyr 1.8.4
prettyunits 1.0.2
processx 3.4.1
progress 1.2.2
promises 1.1.0
ps 1.3.0
purrr 0.3.3
quantreg 5.52
R6 2.4.1
Rcmdr 2.6-1
RcmdrMisc 2.5-1
RColorBrewer 1.1-2
Rcpp 1.0.3
RcppEigen 0.3.3.7.0
readr 1.3.1
readstata13 0.9.2
readxl 1.3.1
relimp 1.0-5
rematch 1.0.1
reshape2 1.4.3
rgl 0.100.30
rio 0.5.16
rlang 0.4.2
rmarkdown 1.18
rstudioapi 0.10
sandwich 2.5-1
scales 1.1.0
sem 3.1-9
shiny 1.4.0
sourcetools 0.1.7
sp 1.3-2
SparseM 1.77
stringi 1.4.3
stringr 1.4.0
survey 3.36
tcltk2 1.2-11
TH.data 1.0-10
tibble 2.1.3
tidyselect 0.2.5
tinytex 0.17
utf8 1.1.4
vctrs 0.2.0
viridis 0.5.1
viridisLite 0.3.0
webshot 0.5.2
withr 2.1.2
xfun 0.11
xtable 1.8-4
yaml 2.2.0
zeallot 0.1.0
zip 2.0.4
zoo 1.8-6
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