https://cran.r-project.org/web/packages/qvalue/index.html states Package ‘qvalue’ was removed from the CRAN repository. Just an FYI
On Tue, Sep 24, 2019 at 6:48 PM Ana Marija <sokovic.anamar...@gmail.com> wrote: > Hello, > > I tried using qvalue function: > > library(qvalue) > qval_obj=qvalue(pvalR) > pi1=1-qval_obj$pi0 > > but after running: > > qval_obj=qvalue(pvalR) > Error in smooth.spline(lambda, pi0, df = smooth.df) : > missing or infinite values in inputs are not allowed > > or > > qval_obj=qvalue(pvalR,lambda=0.5) > Error in pi0est(p, ...) : > ERROR: The estimated pi0 <= 0. Check that you have valid > p-values or use a different range of lambda. > > I checked: > > max(pvalR) > [1] 0.000352731 > min(pvalR) > [1] 1.84872e-127 > sum(is.na(pvalR)) > [1] 0 > sum(is.infinite(pvalR)) > [1] 0 > > Please advise, > > Thanks > Ana > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
