On Thu, 3 May 2018, Bert Gunter wrote:
... In addition, you may wish to also post on the Bioconductor list
for this sort of thing.
... where "this sort of thing" is the original subject matter "molecular
properties" rather than the sidebar about the sos package which is
probably better discussed here.
FWIW I don't think the sos package will help you search Bioconductor.
-- Bert
Bert Gunter
"The trouble with having an open mind is that people keep coming along
and sticking things into it."
-- Opus (aka Berkeley Breathed in his "Bloom County" comic strip )
On Thu, May 3, 2018 at 12:58 AM, Spencer Graves
<spencer.gra...@effectivedefense.org> wrote:
library(sos)
(mp <- findFn('{molecular properties}'))
** found 7 matches in 4 packages and opened two web pages in my
default browser with (a) the 7 matches and (b) the 4 packages. The first
function was something for amino acids, like you suggested. Two others
returned compound and substance information from PubChem.
Does this help?
Spencer
On 2018-05-02 19:17, bbb_...@verizon.net wrote:
All
Is there a package or library that will, given a nucleotide sequence
1. calculate the extinction coefficient at 260 nm for (Beer-Lambert's law)
2. calculate molecular weight
3. return it's complementary sequence
I was able to find several packages that can do similar calculations for
an amino acid sequence for proteins but none for nucleic acids.
Any pointers, etc. would be great.
thank you in advance
Indr
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