Hi, As I was doing some searching, it would appear that you also posted to the package's GitHub repo and obtained a solution there:
https://github.com/rstudio/markdown/issues/88 For specific packages, in situations like this, contacting the package maintainer as you did, is a good first step. For future reference, since you are running on RH, there is the R-SIG-Fedora list, which covers issues associated with running R on RH and Fedora based distros: https://stat.ethz.ch/mailman/listinfo/r-sig-fedora Regards, Marc Schwartz > On Jan 19, 2018, at 9:57 AM, Daniel King <dk...@havertys.com> wrote: > > > Hi, folks. > > I was wondering if any of you could point me in the right direction. > > Using R 3.3.3 (and later), on an IBM Power LPAR, Red Hat 7 PPC64le, markdown > build fails as below. > >> install.packages("markdown") > trying URL 'https://cloud.r-project.org/src/contrib/markdown_0.8.tar.gz' > Content type 'unknown' length 80583 bytes (78 KB) > ================================================== > downloaded 78 KB > > installing source package 'markdown' ... > ** package 'markdown' successfully unpacked and MD5 sums checked > ** libs > /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG > -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c Rbase64.c -o > Rbase64.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include > -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c > Rinit.c -o Rinit.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 > -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 > -qstrict -qfloat=nomaf:fenv -c Rmarkdown.c -o Rmarkdown.o > /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG > -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c autolink.c > -o autolink.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include > -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c > buffer.c -o buffer.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 > -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 > -qstrict -qfloat=nomaf:fenv -c houdini_href_e.c -o houdini_href_e.o > /opt/ibm/xlC/13. 1. > 6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include > -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c houdini_html_e.c -o > houdini_html_e.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 > -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 > -qstrict -qfloat=nomaf:fenv -c html.c -o html.o /opt/ibm/xlC/13.1.6/bin/xlc_r > -q64 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 > -qstrict -qfloat=nomaf:fenv -c html_smartypants.c -o html_smartypants.o > /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG > -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c markdown.c > -o markdown.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include > -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c > stack.c -o stack.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -qmkshrobj -shared > -L/usr/local/lib64/R/lib -L/usr/local/lib64 -o markdown.so Rbase64.o Rinit.o > Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdi n > i_html_e.o html.o html_smartypants.o markdown.o stack.o > -L/usr/local/lib64/R/lib -lR > markdown.o: In function find_block_tag': > /tmp/RtmpqYsbzz/R.INSTALL1cb764af1cf/markdown/src/./html_blocks.h:206: > undefined reference tofind_block_tag$AF85_1' > /usr/bin/ld: markdown.so: internal symbol `find_block_tag$AF85_1' isn't > defined > /usr/bin/ld: final link failed: Bad value > make: *** [markdown.so] Error 1 > ERROR: compilation failed for package 'markdown' > removing '/usr/local/lib64/R/library/markdown' > The downloaded source packages are in > '/tmp/Rtmpl7vFYx/downloaded_packages' > Updating HTML index of packages in '.Library' > Making 'packages.html' ... done > Warning message: > In install.packages("markdown") : > installation of package 'markdown' had non-zero exit status > > ... > > It looks like the issue can be traced down to, "!gperf_case_strncmp (str, s, > len)" ... is there a way to trace this down further? > > # tail markdown/src/html_blocks.h > if (key <= MAX_HASH_VALUE && key >= 0) > { > register const char *s = wordlist[key]; > > if ((((unsigned char)*str ^ (unsigned char)*s) & ~32) == 0 && > !gperf_case_strncmp (str, s, len) && s[len] == '\0') > return s; > } > } > return 0; > } > > Any assistance is appreciated. > > A. Daniel King > Haverty Furniture Companies, Inc. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
