Perfect, thank you very much for the tip.
-Roy
> On Sep 6, 2017, at 5:26 PM, William Dunlap <wdun...@tibco.com> wrote:
>
> withr:::set_makevars() can give that error if the makefile named by the
> 'old_path' argument (default "~/.R/Makevars) contains more than one
> definition of a variable of the form 'name=value'. You can see what file it
> is reading and its contents by using the trace() function:
>
> trace(withr:::set_makevars, quote({ cat(old_path, "\n"); writeLines(paste0("
> ", tryCatch(readLines(old_path), error=function(e)conditionMessage(e))))}))
>
> Then run your test and see what file set_makevars is complaining about and
> what in the file might cause trouble for set_makevars.
>
>
> Bill Dunlap
> TIBCO Software
> wdunlap tibco.com <http://tibco.com/>
> On Wed, Sep 6, 2017 at 3:41 PM, Roy Mendelssohn - NOAA Federal
> <roy.mendelss...@noaa.gov <mailto:roy.mendelss...@noaa.gov>> wrote:
> Hi All;
>
> This problem has come about from trying to learn some of the review practices
> recommend by rOpensci. One of them is to use the package goodpractice.
> After installing goodpractice, it kept failing on my own packages which are
> under development, and I was concerned something was funny in my own , so I
> have a fork of the package rerddap, and I tested goodpractice on that. I
> get the error:
>
> > Error in set_makevars(new, path, makevars_file, assignment = assignment) :
> > Multiple results for CXXFLAGS found, something is wrong.FALSE
> >
>
>
> So after some playing around that is from the very first test, which uses
> the covr:package_coverage(), and sure enough running that produces the same
> error. Looking at the code, that error is being thrown by the function
> withr::set_makevars(). We are now too many layers deep into packages for me
> to follow what is going on, but the kicker is Scott Chamberlain can run it
> without any errors on the same package. Session_info for both of us follows.
> If any one has any suggestions both as to what is causing this and a
> possible solution, would appreciate it.
>
> Roy's sessionInfo is after running the commands:
>
> Sys.setenv(NOT_CRAN = "true")
> x = goodpractice::gp(path = ".", checks = all_checks()[2:230])
>
> Scott's is after running:
>
> Sys.setenv(NOT_CRAN = "true")
> x = goodpractice::gp()
>
>
>
>
> Roy's_session_info()
> ─ Session info
> ──────────────────────────────────────────────────────────────────────────────────────────────────────────────
> setting value
> version R version 3.4.1 (2017-06-30)
> os macOS Sierra 10.12.6
> system x86_64, darwin15.6.0
> ui RStudio
> language (EN)
> collate en_US.UTF-8
> tz America/Los_Angeles
> date 2017-09-06
>
> ─ Packages package * version date source
> assertthat 0.2.0 2017-04-11 CRAN (R 3.4.1)
> backports 1.1.0 2017-05-22 CRAN (R 3.4.0)
> callr 1.0.0.9000 2017-09-02 Github (r-lib/callr@2dffbbe)
> clisymbols 1.2.0 2017-09-02 Github (gaborcsardi/clisymbols@e49b4f5)
> covr 3.0.0 2017-06-26 CRAN (R 3.4.1)
> crayon 1.3.2.9000 2017-08-25 Github (gaborcsardi/crayon@e4dba3b)
> cyclocomp 1.1.0 2017-09-02 Github (MangoTheCat/cyclocomp@6156a12)
> debugme 1.0.2 2017-03-01 CRAN (R 3.4.0)
> desc 1.1.1 2017-08-03 CRAN (R 3.4.1)
> devtools 1.13.3.9000 2017-08-31 Github (hadley/devtools@91490d1)
> digest 0.6.12 2017-01-27 CRAN (R 3.4.1)
> goodpractice * 1.0.0 2017-09-02 Github
> (MangoTheCat/goodpractice@9969799)
> httr 1.3.1 2017-08-20 CRAN (R 3.4.1)
> igraph 1.1.2 2017-07-21 CRAN (R 3.4.1)
> jsonlite 1.5 2017-06-01 CRAN (R 3.4.0)
> knitr 1.17 2017-08-10 CRAN (R 3.4.1)
> lazyeval 0.2.0 2016-06-12 CRAN (R 3.4.0)
> lintr 1.0.1 2017-08-10 CRAN (R 3.4.1)
> magrittr 1.5 2014-11-22 CRAN (R 3.4.0)
> memoise 1.1.0 2017-04-21 CRAN (R 3.4.0)
> pkgbuild 0.0.0.9000 2017-08-31 Github (r-lib/pkgbuild@6574561)
> pkgconfig 2.0.1 2017-03-21 CRAN (R 3.4.0)
> pkgload 0.0.0.9000 2017-08-31 Github (r-pkgs/pkgload@80a6493)
> praise 1.0.0 2015-08-11 CRAN (R 3.4.0)
> processx 2.0.0.1 2017-07-30 CRAN (R 3.4.1)
> R6 2.2.2 2017-06-17 CRAN (R 3.4.0)
> rcmdcheck 1.2.1 2016-09-28 CRAN (R 3.4.0)
> Rcpp 0.12.12 2017-07-15 CRAN (R 3.4.1)
> remotes 1.1.0 2017-07-09 CRAN (R 3.4.1)
> rex 1.1.1 2016-12-05 CRAN (R 3.4.0)
> rlang 0.1.2.9000 2017-09-05 Github (tidyverse/rlang@fd64bce)
> rprojroot 1.2 2017-01-16 CRAN (R 3.4.0)
> rstudioapi 0.6.0.9000 2017-08-31 Github (rstudio/rstudioapi@e1e466b)
> sessioninfo 1.0.1 2017-08-31 Github (r-lib/sessioninfo@e813de4)
> stringi 1.1.5 2017-04-07 CRAN (R 3.4.0)
> stringr 1.2.0 2017-02-18 CRAN (R 3.4.0)
> usethis 0.0.0.9000 2017-08-31 Github (r-lib/usethis@12e6f95)
> whoami 1.1.1 2015-07-13 CRAN (R 3.4.0)
> withr 2.0.0 2017-07-28 CRAN (R 3.4.1)
> xml2 1.1.1 2017-01-24 CRAN (R 3.4.0)
> xmlparsedata 1.0.1 2016-06-18 CRAN (R 3.4.0)
> yaml 2.1.14 2016-11-12 CRAN (R 3.4.0)
>
>
> Scott's _ sessionInfo()
> Session info
> ------------------------------------------------------------------
> setting value
> version R version 3.4.1 Patched (2017-07-04 r72893)
> system x86_64, darwin15.6.0
> ui X11
> language (EN)
> collate en_US.UTF-8
> tz America/Los_Angeles
> date 2017-09-06
>
> Packages
> ----------------------------------------------------------------------
> package * version date source
> assertthat 0.2.0 2017-04-11 CRAN (R 3.4.0)
> backports 1.1.0 2017-05-22 CRAN (R 3.4.0)
> base * 3.4.1 2017-07-06 local
> callr 1.0.0.9000 2017-07-31 Github (r-lib/callr@ce3f15c)
> clisymbols 1.2.0 2017-06-10 Github (gaborcsardi/clisymbols@83b13a0)
> compiler 3.4.1 2017-07-06 local
> covr 3.0.0 2017-06-26 CRAN (R 3.4.0)
> crayon 1.3.2.9000 2017-07-31 Github (gaborcsardi/crayon@750190f)
> cyclocomp 1.1.0 2017-05-04 Github (MangoTheCat/cyclocomp@6156a12)
> datasets * 3.4.1 2017-07-06 local
> debugme 1.0.2 2017-03-01 cran (@1.0.2)
> desc 1.1.1 2017-08-03 CRAN (R 3.4.1)
> devtools * 1.13.3 2017-08-02 CRAN (R 3.4.1)
> digest 0.6.12 2017-01-27 CRAN (R 3.4.0)
> goodpractice 1.0.0 2017-06-10 Github
> (MangoTheCat/goodpractice@9969799)
> graphics * 3.4.1 2017-07-06 local
> grDevices * 3.4.1 2017-07-06 local
> httr 1.3.1 2017-08-20 CRAN (R 3.4.1)
> jsonlite 1.5 2017-06-01 CRAN (R 3.4.0)
> lazyeval 0.2.0 2016-06-12 CRAN (R 3.4.0)
> lintr 1.0.1 2017-08-10 CRAN (R 3.4.1)
> magrittr 1.5 2014-11-22 CRAN (R 3.4.0)
> memoise 1.1.0 2017-04-21 CRAN (R 3.4.0)
> methods * 3.4.1 2017-07-06 local
> praise 1.0.0 2015-08-11 CRAN (R 3.4.0)
> prettyunits 1.0.2 2015-07-13 CRAN (R 3.4.0)
> processx 2.0.1.9000 2017-07-31 Github (r-lib/processx@c02b0f3)
> R6 2.2.2 2017-06-17 CRAN (R 3.4.0)
> rcmdcheck 1.2.1.9000 2017-06-10 Github (r-pkgs/rcmdcheck@a18119c)
> Rcpp 0.12.12 2017-07-15 cran (@0.12.12)
> remotes 1.1.0 2017-07-09 CRAN (R 3.4.1)
> rex 1.1.1 2016-03-11 CRAN (R 3.4.0)
> rprojroot 1.2 2017-01-16 CRAN (R 3.4.0)
> rstudioapi 0.6 2016-06-27 CRAN (R 3.4.0)
> stats * 3.4.1 2017-07-06 local
> tools 3.4.1 2017-07-06 local
> utils * 3.4.1 2017-07-06 local
> whoami 1.1.1 2015-07-13 CRAN (R 3.4.0)
> withr 2.0.0 2017-09-05 Github (jimhester/withr@eff4818)
> xml2 1.1.1 2017-01-24 CRAN (R 3.4.0)
> xmlparsedata 1.0.1 2016-06-18 cran (@1.0.1)
>
>
> **********************
> "The contents of this message do not reflect any position of the U.S.
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: roy.mendelss...@noaa.gov <mailto:roy.mendelss...@noaa.gov> www:
> http://www.pfeg.noaa.gov/ <http://www.pfeg.noaa.gov/>
>
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>
> ______________________________________________
> R-help@r-project.org <mailto:R-help@r-project.org> mailing list -- To
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> <http://www.r-project.org/posting-guide.html>
> and provide commented, minimal, self-contained, reproducible code.
>
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