First, please read WGCNA FAQ at https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/faq.html regarding using RNA-seq and other count data.
Second, if you insist on using WGCNA on raw count data (which I don't recommend), use something like storage.mode(datExpr) = "double" and try again. Peter On Sun, Jul 9, 2017 at 2:29 AM, Ankush Sharma <ankush....@gmail.com> wrote: > Dear all , > > I would like to reconstruct coexpression networks from proteomic count data > having integer values. Some internal function doesn't like to work well with > integers. How can this error be rectified? > > >> adjacency = adjacency(datExpr, power = softPower, type = "signed"); > Error in cor(datExpr, use = "p") : > REAL() can only be applied to a 'numeric', not a 'integer' > > > > Appreciate your help , Many thanks > > Best Regards, > Ankush Sharma ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
