Hi all, I am having some problems in updating some packages from source. I start with : install.packages("Boom",lib="C:/RownLib",type="source")
I get the following error message : * installing *source* package 'Boom' ... ** package 'Boom' successfully unpacked and MD5 sums checked ** libs *** arch - i386 c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include" -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c Models/Bart/Bart.cpp -o Models/Bart/Bart.o 0 [main] make (3304) c:\Rtools\bin\make.exe: *** fatal error - cygheap base mismatch detected - 0xD57408/0xC47408. This problem is probably due to using incompatible versions of the cygwin DLL. Search for cygwin1.dll using the Windows Start->Find/Search facility and delete all but the most recent version. The most recent version *should* reside in x:\cygwin\bin, where 'x' is the drive on which you have installed the cygwin distribution. Rebooting is also suggested if you are unable to find another cygwin DLL. 0 [main] make 9868 fork: child -1 - forked process 3304 died unexpectedly, retry 0, exit code 0xC0000142, errno 11 make: vfork: Resource temporarily unavailable c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include" -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c Models/Bart/GaussianBartModel.cpp -o Models/Bart/GaussianBartModel.o 0 [main] make (5256) c:\Rtools\bin\make.exe: *** fatal error - cygheap base mismatch detected - 0xD57408/0xEB7408. This problem is probably due to using incompatible versions of the cygwin DLL. Search for cygwin1.dll using the Windows Start->Find/Search facility and delete all but the most recent version. The most recent version *should* reside in x:\cygwin\bin, where 'x' is the drive on which you have installed the cygwin distribution. Rebooting is also suggested if you are unable to find another cygwin DLL. 31956 [main] make 9868 fork: child -1 - forked process 5256 died unexpectedly, retry 0, exit code 0xC0000142, errno 11 make: vfork: Resource temporarily unavailable c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include" -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c Models/Bart/GaussianLinearBartModel.cpp -o Models/Bart/GaussianLinearBartModel.o 0 [main] make (2308) c:\Rtools\bin\make.exe: *** fatal error - cygheap base mismatch detected - 0xD57408/0xDB7408. This problem is probably due to using incompatible versions of the cygwin DLL. Search for cygwin1.dll using the Windows Start->Find/Search facility and delete all but the most recent version. The most recent version *should* reside in x:\cygwin\bin, where 'x' is the drive on which you have installed the cygwin distribution. Rebooting is also suggested if you are unable to find another cygwin DLL. 65040 [main] make 9868 fork: child -1 - forked process 2308 died unexpectedly, retry 0, exit code 0xC0000142, errno 11 make: vfork: Resource temporarily unavailable c:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/R/R-34~1.0/include" -I. -I../inst/include -IBmath -Imath/cephes -DNO_BOOST_THREADS -DNO_BOOST_FILESYSTEM -DADD_ -DRLANGUAGE -I"C:/RownLib/BH/include" -I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2 -c Models/Bart/LogitBartModel.cpp -o Models/Bart/LogitBartModel.o 0 [main] sh (1836) C:\Rtools\bin\sh.exe: *** fatal error - cygheap base mismatch detected - 0xD57408/0xDD7408. This problem is probably due to using incompatible versions of the cygwin DLL. Search for cygwin1.dll using the Windows Start->Find/Search facility and delete all but the most recent version. The most recent version *should* reside in x:\cygwin\bin, where 'x' is the drive on which you have installed the cygwin distribution. Rebooting is also suggested if you are unable to find another cygwin DLL. make: *** [Models/Bart/LogitBartModel.o] Error 127 Warning: running command 'make -f "Makevars" -f "C:/R/R-34~1.0/etc/i386/Makeconf" -f "C:/R/R-34~1.0/share/make/winshlib.mk" -f "C:/Users/john/Documents/.R/Makevars" CXX='$(CXX11) $(CXX11STD)' CXXFLAGS='$(CXX11FLAGS)' CXXPICFLAGS='$(CXX11PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX11LDFLAGS)' SHLIB_LD='$(SHLIB_CXX11LD)' SHLIB="Boom.dll" ' had status 2 ERROR: compilation failed for package 'Boom' * removing 'C:/RownLib/Boom' * restoring previous 'C:/RownLib/Boom' Warning in install.packages : running command '"C:/R/R-34~1.0/bin/x64/R" CMD INSTALL -l "C:\RownLib" C:\TMP\Rtmpegxnel/downloaded_packages/Boom_0.7.tar.gz' had status 1 Warning in install.packages : installation of package ‘Boom’ had non-zero exit status > sessionInfo()R version 3.4.0 (2017-04-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows >= 8 x64 (build 9200) Matrix products: default locale: [1] LC_COLLATE=Swedish_Sweden.1252 LC_CTYPE=Swedish_Sweden.1252 LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C [5] LC_TIME=Swedish_Sweden.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] shiny_1.0.3 compiler_3.4.0 R6_2.2.1 htmltools_0.3.6 tools_3.4.0 withr_1.0.2 Rcpp_0.12.11 memoise_1.1.0 [9] git2r_0.18.0 digest_0.6.12 xtable_1.8-2 httpuv_1.3.3 mime_0.5 ghit_0.2.17 devtools_1.13.2 On checking, I have confirmed that the only location of cygwin1.dll is : C:\Rtools\bin I have not had any similiar problems before prior R3.4. The only new installation that I have done recently is python with Anaconda2. But I can't see any cygwin1.dll there. I wonder what the problem is. I will appreciate any help that I can get. Thanks, Vivek [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.