Windows. A funny name for a operating system that doesn't let you see anything.
Jim On Mon, May 22, 2017 at 11:59 PM, Pau Marc Muñoz Torres <paum...@gmail.com> wrote: > i could make it worl, thanks for your help, it was usefull > > Pau Marc Muñoz Torres > skype: pau_marc > http://www.linkedin.com/in/paumarc > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ > > > 2017-05-22 15:38 GMT+02:00 Pau Marc Muñoz Torres <paum...@gmail.com>: > >> hi to you both >> >> You are right peter, I probably miss understood the system.file function. >> I was trying to use it with a package from bioconductor and when i saw that >> it didn't work for me, I tested with readxl and still do not working, so I >> am doing something wrong with system.file >> >> the original script was >> >> >> library(SICtools) >> >> bam1 <- system.file(package='SICtools','extdata','example1.bam') >> >> the example1.bam file is supposed to be at the working directory (i >> changed the directory using setwd()), it was changed to /home/paumarc/Bam >> >> i tried to change extdata for my working directory but it did not work >> >> thanks >> >> Pau Marc Muñoz Torres >> skype: pau_marc >> http://www.linkedin.com/in/paumarc >> http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ >> >> >> 2017-05-22 14:53 GMT+02:00 peter dalgaard <pda...@gmail.com>: >> >>> >>> > On 22 May 2017, at 14:43 , Pau Marc Muñoz Torres <paum...@gmail.com> >>> wrote: >>> > >>> > Hello everybody >>> > >>> > I am trying to use system.file but it returns not file found >>> > >>> > what I have done is >>> > >>> >> sample <- system.file("results.xlsx","estdata", package = >>> > "readxl",mustWork = TRUE) >>> > Error in system.file("results.xlsx", "estdata", package = "readxl", >>> > mustWork = TRUE) : >>> > no file found >>> > >>> > i have checked the path was correct and the file exists with >>> > >>> > FILES <- file.path("results.xlsx") >>> > present <- file.exists(FILES) >>> > >>> > and it returned a true values. Anyone can tell me which can be the >>> problem ? >>> >>> Not if you don't tell us WHERE you expect to find the file... >>> >>> Where is it located, and what is the value of FILES above? >>> >>> It is not unlikely that you misunderstande what system.file() is supposed >>> to do. >>> >>> -pd >>> >>> >>> > >>> > thanks >>> > >>> > Pau Marc Muñoz Torres >>> > skype: pau_marc >>> > http://www.linkedin.com/in/paumarc >>> > http://www.researchgate.net/profile/Pau_Marc_Torres3/info/ >>> > >>> > [[alternative HTML version deleted]] >>> > >>> > ______________________________________________ >>> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> > https://stat.ethz.ch/mailman/listinfo/r-help >>> > PLEASE do read the posting guide http://www.R-project.org/posti >>> ng-guide.html >>> > and provide commented, minimal, self-contained, reproducible code. >>> >>> -- >>> Peter Dalgaard, Professor, >>> Center for Statistics, Copenhagen Business School >>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >>> Phone: (+45)38153501 >>> Office: A 4.23 >>> Email: pd....@cbs.dk Priv: pda...@gmail.com >>> >>> >>> >>> >>> >>> >>> >>> >>> >>> >> > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
