Hello, I'm Davide. I'm using the package RANKS, in particular the functions do.GBA, do.RW, do.RANKS. To the funcs are given 2 different Matrix. One is a a simmetryc adjacency Matrix(called "M"), where rows and columns are protein, and the other is an annotation Matrix(called "ann"), where protein are rows(the same of the first Matrix) and and the annotations are columns.
I write a script in order to filter both the matrices, choosing only protein with 5 or more annotations. To be more specific, using the functions, data=M, labels=ann. But, running the script, it gives me an error message about the functions of interest: Error in apply(W[, ind.positives], 1, sum) : dim(X) deve avere lunghezza positiva In paritcular it gives me the error during the FOR cycle, when it works on the 6th column. How can I resolve it? what is the reason? Thank you in advance, best regards, Davide. [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.