> On Dec 31, 2016, at 11:22 AM, Elham - via R-help <r-help@r-project.org> wrote:
> 
> hello all,I am following this link 
> http://genomicsclass.github.io/book/pages/GEOquery.html for importing 
> data.but I have a problem in a step of (Access GSE Data Tables from GEO).in 
> the example of tutorial there are 266 samples,but by this function
> dim(pData(gse[[1]]))head(pData(gse[[1]])[, 1:3])                              
>                                               the result in R is:
> 
>> dim(pData(gse[[1]]))[1] 266  47> head(pData(gse[[1]])[, 1:3])          title 
>> geo_accession                statusGSM540108   BC1     GSM540108 Public on 
>> May 05 2010GSM540109   BC2     GSM540109 Public on May 05 2010GSM540110   
>> BC3     GSM540110 Public on May 05 2010GSM540111   BC4     GSM540111 Public 
>> on May 05 2010GSM540112   BC5     GSM540112 Public on May 05 2010GSM540113   
>> BC6     GSM540113 Public on May 05 2010
> where is another samples? 
>       [[alternative HTML version deleted]]


This is the first code seen at that page:

source("http://bioconductor.org/biocLite.R";)
biocLite("GEOquery")

You were told earlier that rhelp is NOT the correct place to post questions 
about Bioconductor packages. What is the cause of your difficulty in 
understanding this fact?

-- 

David Winsemius
Alameda, CA, USA

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  • [R] GEOquery Elham - via R-help
    • Re: [R] GEOquery David Winsemius

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