Hi, I am using R 3.3.1 in R studio version 1.0.44 (Windows10, 64 bit system). I could import text file with Boolean rules, but when I start doing analysis in R, I get the error: I have been trying to do attractor analysis using R package Boolnet, using the command: attr <- getAttractors(net, type="asynchronous"). This command throws up the below error:
Error in matrix(nrow = n, ncol = length(network$genes)) : invalid 'nrow' value (too large or NA) In addition: Warning message: In matrix(nrow = n, ncol = length(network$genes)) : NAs introduced by coercion to integer range Have anyone come across this error?. I have attached the text file with Boolean rules. Pls find it. Any suggestions or ideas, would be of great help Thank you Priya
Targets, factors DISC1, (!miR124 & !let7b & !let7a & !let7d) | (PCM1 & BBS4) | (MITF | GATA1 | TAL1 | EZH2 | AR | TCF3 | HNF4A | RUNX1) MITF, (MITF) GATA1, (GATA1) TAL1, (!miR377) | (TAL1) EZH2, (!miR124) | (EZH2) AR, (!miR124) | (AR) TCF3, (!miR124) | (TCF3) miR124, (EGR1) miR377, (miR377) let7b, (let7b) let7a, (let7a) let7d, (let7d) PCM1, (! miR33a) | (DISC1 & BBS4) | (EGR1 | SALL4 | POU3F2 | THAP11 | HCFC1 | ZFP281 | WT1 | SOX2 | CUX1 | SIN3B | KDM5B | HOXB4 | ELK1 | TCF3 | FLI1 | HNF4A | RUNX1 | MITF) miR33a, (miR33a) EGR1, (! miR124) | (EGR1) SALL4, (SALL4) POU3F2, (POU3F2) THAP11, (THAP11) HCFC1, (HCFC1) ZFP281, (ZFP281) WT1, (WT1) SOX2, (SOX2) CUX1, (CUX1) SIN3B, (SIN3B) KDM5B, (KDM5B) HOXB4, (HOXB4) ELK1, (ELK1) FLI1, (FLI1) HNF4A, (HNF4A) RUNX1, (RUNX1) BBS4, (! miR432 & ! miR382 & ! miR127 & ! miR377) | (DISC1 & PCM1) | (E2F1 | GATA1 | FLI1 | MITF | ELK1 | CUX1 | KDM5B | SIN3B) | GABP | EOMES | TFAP2A) miR432, (miR432) miR382, (miR382) miR127, (miR127) E2F1, (! let7a) | (E2F1) TFAP2A, (TFAP2A) EOMES, (EOMES) GABP, (GABP)
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