>>>>> Isaudin Ismail <isau...@gmail.com>
>>>>> on Thu, 18 Aug 2016 17:03:50 +0100 writes:
> Dear Martin, Following my earlier question on "error while
> fitting gumbel copula", I have also crated a new gist at
> https://gist.github.com/anonymous/0bb8aba7adee550d40b840a47d8b7e25
> for easy checking and copying codes.
> I got no problem fitting other Archimedean copulas except
> gumbel copula as per my code I used above.
> Appreciate your kind help.
> Many thanks, Isaudin
> On Mon, Aug 15, 2016 at 4:28 PM, Isaudin Ismail
> <isau...@gmail.com> wrote:
>> Dear Dr. Martin,
>>
>> I'm glad that you replied to my queries.
>>
>> As advised, I have prepared the following:
MM: I'm including (cut'n'pasting) my commented and augmented version here:
------------------------------------------------------------------
## From: Isaudin Ismail <isau...@gmail.com>
## To: Martin Maechler <maech...@stat.math.ethz.ch>
## CC: <r-help@r-project.org>
## Subject: Re: [R] Error while fitting gumbel copula
## Date: Mon, 15 Aug 2016 16:28:14 +0100
## Dear Dr. Martin,
## I'm glad that you replied to my queries.
## As advised, I have prepared the following:
library(copula)
## 5 series of data, A, B, C, D and E
A <- c(0.849420849, 0.900652985, 0.97144217, 0.817888428, 0.877901578,
1.070040669, 0.889742431, 0.87588968, 0.853541938, 0.848664688,
0.876830319, 0.749582638, 0.818515498, 0.890997174, 0.794766966,
0.784794851, 0.814858959, 1.074396518, 0.83752495, 0.894341116,
0.880375293, 0.900816803)
B <- c(0.479850746, 0.652111668, 1.880607815, 0.579902303, 0.50669344,
0.747560182, 0.701754386, 0.48969697, 0.346751006, 0.379234973,
0.862691466, 0.328280188, 0.317312661, 0.534438115, 0.487002653,
0.335043612, 0.373346897, 0.627520161, 0.792114695, 0.938253012,
0.444553967, 0.625972763)
C <- c(0.693491124, 0.866523143, 4.585714286, 1.512055109, 0.387755102,
0.513435701, 0.76252505, -0.113113113, 0.338521401, 0.333951763,
0.668755595, 0.401273885, 0.419868791, 0.272885789, 0.541541542,
0.32751938, 0.386409736, 0.957446809, 0.861195542, 1.531632653,
0.431610942, 1.226470588)
D <- c(0.807792208, 0.548547718, 0.738232865, 0.542247744, 1.088964927,
0.862385321, 0.60720268, 1.000816993, 0.699289661, 0.41723356,
0.604037267, 0.605003791, 0.698940998, 0.764792899, 0.647897898,
0.825256975, 0.767476085, 0.941391941, 0.889547813, 0.324503311,
0.942435424, 0.740686633)
E <- c(1.077598829, 0.318507891, 1.152616279, 0.930397727, 1.515994437,
0.940689655, 0.880886427, 1.054274084, 1.067282322, 0.677419355,
0.966233766, 0.761029412, 1.05734767, 0.615925059, 1.061988304,
1.07184241, 1.058890147, 1.123873874, 1.304891923, -0.069584736,
1.172757475, 0.501096491)
require(copula)
gumbel.copula <- gumbelCopula(dim = 2)
p <- pobs(cbind(D + E, A + B+ C ))
fit.gumbel <- fitCopula(gumbel.copula, p, method = "ml")
## The error is here when trying to fit the gumbel copula
# I got the following error:
## Error in optim(start, loglikCopula, lower = lower, upper = upper, method =
## method, :
## non-finite finite-difference value [1]
## In addition: Warning message:
## In .local(copula, tau, ...) : tau is out of the range [0, 1]
## MM: my version of copula gives the error message "some tau < 0"
## -- ---------
## and indeed:
(tau.p <- cor(p[,1], p[,2], method="kendall"))
## [1] -0.1428571
## ^--------- Kendall's tau is = - 1/7 < 0 ... and that is not good for
Gumbel!
plot(p)
##-----------------------------------------------------------------------------
So, you tried fitting to *negatively* correlated data, and if
you use the default instead of "ml" the copula is fit, and uses
param = 1 (which corresponds to the *independence* copula:
Because among all the (weakly) positively correlated gumbel
copulas, the boundary case, param = 1 (<==> tau = 0) is the best
fitting.
What you can do is to "rotate" the data (actually mirror it),
and fit a gumbel copula, which now works nice and easily :
p2 <- p; p2[,2] <- 1-p2[,2]
(tau.p2 <- cor(p2, method="kendall"))
## --> now positively correlated
## --->
gumb.ml.p2 <- fitCopula(gumbel.copula, p2, method = "ml")
summary(gumb.ml.p2) # looks fine now :
Call: fitCopula(copula, data = data, method = "ml")
Fit based on "maximum likelihood" and 22 2-dimensional observations.
Gumbel copula, dim. d = 2
Estimate Std. Error
param 1.121 0.209
The maximized loglikelihood is 0.1839
Optimization converged
Number of loglikelihood evaluations:
function gradient
6 6
---
The next version of copula --- or the R-forge one, if you are
interested will support fitting "rotated" copulas,
so you fit a rotated gumbel copula, flipping, the 2nd coordinate
(but not the first):
rotGcop <- rotCopula(gumbelCopula(), flip=c(FALSE,TRUE))
f2 <- fitCopula(rotGcop, data = p) # default method: "mlp"
summary(f2)
## Call: fitCopula(copula, data = data)
## Fit based on "maximum pseudo-likelihood" and 22 2-dimensional observations.
## rotCopula copula: Gumbel copula, dim. d = 2
## Estimate Std. Error
## param 1.121 0.225
## The maximized loglikelihood is 0.1839
## Optimization converged
## Number of loglikelihood evaluations:
## function gradient
## 6 6
-------
Best regards,
Martin Maechler,
ETH Zurich
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