On 30/06/2016 2:35 AM, [email protected] wrote:
Hi Duncan,
I would not have changed the COMPILED_BY option unless I thought I have
to.
In my "C:\R-Project\Rtools\mingw_32\bin" I have
c++.exe
g++.exe
gcc.exe
i686-w64-mingw32-c++.exe
i686-w64-mingw32-g++.exe
i686-w64-mingw32-gcc-4.9.3.exe
i686-w64-mingw32-gcc.exe
In my "C:\R-Project\Rtools\mingw_64\bin" I have
c++.exe
cpp.exe
g++.exe
gcc.exe
x86_64-w64-mingw32-c++.exe
x86_64-w64-mingw32-g++.exe
x86_64-w64-mingw32-gcc-4.9.3.exe
x86_64-w64-mingw32-gcc.exe
Which one should I configure and use?
You don't choose that, the Makefiles in R (or in your package, if you
have one) chooses. The COMPILED_BY definition is not involved in that
decision.
Duncan Murdoch
Kind regards
Georg
Von: Duncan Murdoch <[email protected]>
An: [email protected],
Kopie: [email protected]
Datum: 29.06.2016 17:34
Betreff: Re: Antwort: Re: Antwort: Re: [R] Installing from source
on Windows 7: tibble [SOLVED]
On 29/06/2016 10:48 AM, [email protected] wrote:
Hi Duncan,
indeed, I did not see the other part of your message.
I did
BINPREF ?= C:/R-Project/Rtools/mingw_32/bin/
COMPILED_BY = g++ # instead of gcc-4.9.3
I wouldn't change the COMPILED_BY; some packages use it to configure
themselves for gcc-4.9.3, as opposed to the previous version gcc-4.6.3.
in "C:\R-Project\R-3.3.0\etc\i386\Makeconf"
and
BINPREF ?= C:/R-Project/Rtools/mingw_64/bin/
COMPILED_BY = g++ # instead of gcc-4.9.3
in "C:\R-Project\R-3.3.0\etc\x64\Makeconf"
Now I could compile the package with no futher errors.
Messages are
-- cut --
* installing *source* package 'tibble' ...
** Paket 'tibble' erfolgreich entpackt und MD5 Summen überprüft
** libs
*** arch - i386
C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
-I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
RcppExports.cpp -o RcppExports.o
C:/R-Project/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
-I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
matrixToDataFrame.cpp -o matrixToDataFrame.o
C:/R-Project/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o
tibble.dll tmp.def RcppExports.o matrixToDataFrame.o
-Ld:/Compiler/gcc-4.9.3/local330/lib/i386
-Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/i386 -lR
installing to C:/R-Project/R-3.3.0/library/tibble/libs/i386
*** arch - x64
C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
-I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
RcppExports.cpp -o RcppExports.o
C:/R-Project/Rtools/mingw_64/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG -I"C:/R-Project/R-3.3.0/library/Rcpp/include"
-I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
matrixToDataFrame.cpp -o matrixToDataFrame.o
C:/R-Project/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o
tibble.dll tmp.def RcppExports.o matrixToDataFrame.o
-Ld:/Compiler/gcc-4.9.3/local330/lib/x64
-Ld:/Compiler/gcc-4.9.3/local330/lib -LC:/R-PROJ~1/R-33~1.0/bin/x64 -lR
installing to C:/R-Project/R-3.3.0/library/tibble/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
*** arch - x64
* DONE (tibble)
-- cut --
So - complete success.
Many thanks for your help.
One last questions: Why did Rtools.exe not create a directory named
"gcc-4.9.3" in "C:\R-Project\Rtools" and putting"
C:\R-Project\Rtools\mingw_32" and "C:\R-Project\Rtools\mingw_64"
directly
in "C:\R-Project\Rtools\"? gcc-4.6.3 was installed that way.
The 4.6.3 compiler was compiled for "multilib" operation: the same
compiler took command line options to distinguish between 32 bit and 64
bit compiles. The newer version doesn't support that, so we need two
separate installs.
Duncan Murdoch
Kind regards
Georg
Von: Duncan Murdoch <[email protected]>
An: [email protected],
Kopie: [email protected]
Datum: 29.06.2016 16:21
Betreff: Re: Antwort: Re: [R] Installing from source on Windows
7:
tibble
On 29/06/2016 10:17 AM, [email protected] wrote:
Hi Duncan,
many thanks for your reply.
I did insert die paths to the g++ compiler because I got the message
about
the not existent compiler.
I took the directories for the compiler out again:
C:\R-Project\Rtools\bin;C:\ProgramData\Oracle\Java\javapath;C:\Program
Files\Python 3.5\Scripts\;C:\Program Files\Python
3.5\;C:\Python27\;C:\Python27\Scripts, etc. etc.
Calling
install.packages("tibble", type = "source")
gives this message:
-- cut --
* installing *source* package 'tibble' ...
** Paket 'tibble' erfolgreich entpackt und MD5 Summen überprüft
** libs
*** arch - i386
c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include" -DNDEBUG
-I"C:/R-Project/R-3.3.0/library/Rcpp/include"
-I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall -mtune=core2
-c
RcppExports.cpp -o RcppExports.o
c:/Rtools/mingw_32/bin/g++: not found
make: *** [RcppExports.o] Error 127
Warnung: Ausführung von Kommando 'make -f
"C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f
"C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk"
SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)'
SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"' ergab
Status 2
ERROR: compilation failed for package 'tibble'
* removing 'C:/R-Project/R-3.3.0/library/tibble'
* restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
Warning in install.packages :
running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l
"C:\R-Project\R-3.3.0\library"
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\RtmpGqOlOW/downloaded_packages/tibble_1.0.tar.gz'
had status 1
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
-- cut --
What else could I do?
You seem to have missed the second part of my advice, describing what to
do with the two Makeconf files.
Duncan Murdoch
Kind regards
Georg
Von: Duncan Murdoch <[email protected]>
An: [email protected], [email protected],
Datum: 29.06.2016 13:07
Betreff: Re: [R] Installing from source on Windows 7: tibble
On 29/06/2016 5:49 AM, [email protected] wrote:
Hi All,
I would like to install R packages from source on Windows 7 64-Bit.
Currently my settings are:
-- cut --
sessionInfo()
R version 3.3.0 (2016-05-03)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.3.0
-- cut --
The environment variable PATH on Windows 7 is set to:
C:\R-Project\Rtools\mingw_32\bin;C:\R-Project\Rtools\mingw_64\bin;C:\R-Project\Rtools\bin;C:\R-Project\Rtools\gcc-4.6.3\bin;C:\Program
Files\Python 3.5\Scripts\;C:\Program Files\Python
3.5\;C:\Python27\;C:\Python27\Scripts; etc. etc.
Take the mingw_32, mingw_64 and gcc-4.6.3 directories off your path.
They aren't needed; the first two could conceivably be harmful.
RTools is installed in C:\R-Project\RTools
The call of
C:\R-Project\Rtools\mingw_64\bin\g++.exe --version
results in
g++ (x86_64-posix-seh, Built by MinGW-W64 project) 4.9.3
If I do
install.packages("tibble", type = "source")
I get
-- cut --
trying URL
'https://cran.uni-muenster.de/src/contrib/tibble_1.0.tar.gz'
Content type 'application/x-gzip' length 38038 bytes (37 KB)
downloaded 37 KB
* installing *source* package 'tibble' ...
** Paket 'tibble' erfolgreich entpackt und MD5 Summen überprüft
** libs
*** arch - i386
c:/Rtools/mingw_32/bin/g++ -I"C:/R-PROJ~1/R-33~1.0/include"
-DNDEBUG
-I"C:/R-Project/R-3.3.0/library/Rcpp/include"
-I"d:/Compiler/gcc-4.9.3/local330/include" -O2 -Wall
-mtune=core2
-c
RcppExports.cpp -o RcppExports.o
c:/Rtools/mingw_32/bin/g++: not found
make: *** [RcppExports.o] Error 127
Warnung: Ausführung von Kommando 'make -f
"C:/R-PROJ~1/R-33~1.0/etc/i386/Makeconf" -f
"C:/R-PROJ~1/R-33~1.0/share/make/winshlib.mk"
SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)'
SHLIB="tibble.dll" OBJECTS="RcppExports.o matrixToDataFrame.o"'
ergab
Status 2
ERROR: compilation failed for package 'tibble'
* removing 'C:/R-Project/R-3.3.0/library/tibble'
* restoring previous 'C:/R-Project/R-3.3.0/library/tibble'
Warning in install.packages :
running command '"C:/R-PROJ~1/R-33~1.0/bin/x64/R" CMD INSTALL -l
"C:\R-Project\R-3.3.0\library"
C:\Users\MAUBAC~1.WEI\AppData\Local\Temp\Rtmp23SQxM/downloaded_packages/tibble_1.0.tar.gz'
had status 1
Warning in install.packages :
installation of package ‘tibble’ had non-zero exit status
-- cut --
There is no make.conf in "C:\R-Project\Rtools\mingw_64\etc". I found
"
Makeconf" in "C:\R-Project\R-3.3.0\etc\x64". Do I need it? How do I
need
to configure the settings in this file?
Yes, since you haven't installed Rtools in the default location, you
should edit two Makeconf files. In
C:\R-Project\R-3.3.0\etc\x64\Makeconf, you want
BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_64/bin/
and in C:\R-Project\R-3.3.0\etc\i386\Makeconf you want
BINPREF ?= c:/R-project/Rtools/gcc-4.9.3/mingw_32/bin/
You need to make sure you don't have an environment variable named
BINPREF defined, or it will override these settings. (If you were
building just one architecture, you could do the setting by
environment
variable, but not if you are trying to build both archs in one call.)
Duncan Murdoch
I searched old aunt Google but did not understand what to do and how
to
configure R environment variables correctly.
What do I need to do to install packages from source?
Kind regards
Georg
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______________________________________________
[email protected] mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
