Hi, I’m maintainer of the R package in Alpine Linux.
I read on multiple places that some packages needs R_HOME variable set to the location where is R installed, so I’ve added it to the system-wide profile. Is this correct, or a misinformation? What system dependencies does R need to compile modules from CRAN? On Alpine the following dependencies are needed to build R: bzip2-dev curl-dev gfortran lapack-dev pcre-dev perl readline-dev xz-dev zlib-dev. Are all of these dependencies needed for compiling modules? Jakub On 13. May 2016, at 11:31, Martin Morgan <martin.mor...@roswellpark.org> wrote: > > > On 05/12/2016 10:25 PM, Alba Pompeo wrote: >> Martin Morgan, I tried an HTTP mirror and it worked. >> What could be the problem and how to fix? >> Also, should I ignore the warning about ignoring environment value of R_HOME? > > It depends on why you set the value in your environment in the first place; > maybe you were trying to use a particular installation of R, but setting > R_HOME is not the way to do that (I use an alias, e.g., > R-3.3='~/bin/R-3-3-branch/bin/R --no-save --no-restore --silent') > > Martin > >> Thanks. >> >> On Thu, May 12, 2016 at 5:59 PM, Tom Hopper <tomhop...@gmail.com> wrote: >>> setInternet2() first thing after launching R might fix that. >>> >>> >>>> On May 12, 2016, at 07:45, Alba Pompeo <albapom...@gmail.com> wrote: >>>> >>>> Hello. >>>> >>>> I've tried to run R, but I receive many warnings and can't do simple >>>> stuff such as installing packages. >>>> >>>> Here's the full log when I run it. >>>> >>>> http://pastebin.com/raw/2BkNpTte >>>> >>>> Does anyone know what could be wrong here? >>>> >>>> Thanks a lot. >>>> >>>> ______________________________________________ >>>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>> PLEASE do read the posting guide >>>> http://www.R-project.org/posting-guide.html >>>> and provide commented, minimal, self-contained, reproducible code. >> >> ______________________________________________ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
