Thank you Bert, Yes I looked a this one and I was looking for if any one has used it or not before? My data set is different what they are showing in the paper
On Wed, Feb 3, 2016 at 4:00 PM, Bert Gunter <bgunter.4...@gmail.com> wrote: > Have you looked here (found immediately by an internet search!)? > > https://cran.r-project.org/web/packages/LDheatmap/vignettes/LDheatmap.pdf > > Cheers, > Bert > > > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along > and sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > > On Wed, Feb 3, 2016 at 1:49 PM, Ashta <sewa...@gmail.com> wrote: > > Hi all, > > > > I am looking for an R package that calculates a pair wise LD > > (linkage disequilibrium) I came up with library(LDheatmap). has any > > one used this library? I would appreciate if I get a help how to use > > this library for my set of data.. > > > > > > My data set look like > > > > Geno file > > Name1 1 1 2 2 2 2 > > Name2 2 2 2 2 2 2 > > Name3 2 2 2 2 2 2 > > Name4 2 2 2 2 2 2 > > Name5 1 1 2 2 2 2 > > > > > > NameN 1 1 1 2 2 2 2 > > > > > > The other file is map file > > Chromosome, SNP, Location (physical) > > > > > > Thank you in advance > > > > ______________________________________________ > > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > > https://stat.ethz.ch/mailman/listinfo/r-help > > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > > and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
