Please stop posting in HTML and use dput() to provide data (as the posting guide requests).
Cheers, Bert Gunter Bert Gunter "Data is not information. Information is not knowledge. And knowledge is certainly not wisdom." -- Clifford Stoll On Sun, Sep 6, 2015 at 8:37 AM, Sergio Fonda <[email protected]> wrote: > Thanks to Marc Schwartz I was able to order a "two factors" > interaction boxplot with median associated to one factor alone. > I tried further to generate facets plot (3x2 boxplots in ggplot2) for the > dataframe reported at bottom and I'm not able to reach a correct plot. > The dataframe is a simulation of genes expressions in five conditions of > patients. > I would like that each of the 5 boxplots were ordered with median of values > associated to the combination "gene*pat.cond". > Any help is much appreciated, > Sergio > ____________________________ > Example Dataframe: > pat.cond gene value > 1 N ADAMTS1 -5.557194292 > 2 N ADAMTS1 -2.576700157 > 3 E ADAMTS1 -6.629356620 > 4 E ADAMTS1 -6.629356620 > 5 E ADAMTS1 -6.629356620 > 6 E ADAMTS1 -6.629356620 > 7 M ADAMTS1 -6.629356620 > 8 M ADAMTS1 -6.629356620 > 9 M ADAMTS1 -6.629356620 > 10 M ADAMTS1 -2.742163709 > 11 N ADAMTS12 -1.084104611 > 12 E ADAMTS12 1.710871953 > 13 E ADAMTS12 6.629356620 > 14 M ADAMTS12 6.629356620 > 15 M ADAMTS12 1.711422682 > 16 E APC -3.665169008 > 17 E APC -1.192183578 > 18 M APC -6.629356620 > 19 M APC 3.696542194 > 20 M APC -3.533991641 > 21 R APC -4.267887134 > 22 N BORIS 6.629356620 > 23 E BORIS 6.629356620 > 24 M BORIS 6.629356620 > 25 M BORIS 6.629356620 > 26 M BORIS 6.629356620 > 27 S BORIS 6.629356620 > 28 E BRCA1 -4.260347862 > 29 E BRCA1 -6.629356620 > 30 E BRCA1 -6.629356620 > 31 M BRCA1 -6.443174967 > 32 M BRCA1 -6.629356620 > 33 M BRCA1 -6.629356620 > 34 M BRCA1 -2.525972281 > 35 N P16 -1.698706675 > 36 M P16 -6.629356620 > 37 M P16 -6.629356620 > 38 M P16 -6.629356620 > 39 S P16 -6.629356620 > 40 S P16 -6.629356620 > 41 S P16 0.518269571 > 42 N DAX1 0.708010228 > 43 E DAX1 -0.337455350 > 44 E DAX1 2.803374605 > 45 E DAX1 -1.407226228 > 46 M DAX1 6.629356620 > 47 S DAX1 2.022408499 > 48 S DAX1 6.629356620 > 49 S DAX1 6.629356620 > 50 S DAX1 6.629356620 > 51 N DKK1 -0.876905559 > 52 N DKK1 0.008176565 > 53 E DKK1 -3.057081024 > 54 M DKK1 0.804046915 > 55 N DKK2 -4.677880676 > 56 N DKK2 -3.264182143 > 57 M DKK2 0.219772061 > 58 R DKK2 -3.205760419 > 59 R DKK2 -3.567799537 > 60 R DKK2 -1.687113091 > 61 S DKK2 -6.629356620 > 62 S DKK2 -6.629356620 > 63 N ESR1 1.479810020 > 64 M ESR1 1.861011014 > 65 N FBP1 -0.110196473 > 66 N FBP1 0.721286184 > 67 E FBP1 -5.107943868 > 68 E FBP1 -4.593812366 > 69 M FBP1 -1.622176688 > 70 S FBP1 -3.097791525 > 71 E FOXL2 -4.564123239 > 72 E FOXL2 3.111180437 > 73 M FOXL2 0.323703764 > 74 M FOXL2 -3.851350485 > 75 R FOXL2 -3.324087523 > 76 S FOXL2 0.739408989 > 77 M GATA5 -1.171932246 > 78 M GATA5 -3.466054731 > 79 M GATA5 -1.283038699 > 80 S GATA5 -2.778390690 > 81 S GATA5 -2.014479273 > 82 S GATA5 -3.015234172 > 83 E GPX3 -6.629356620 > 84 E GPX3 -1.942190735 > 85 M GPX3 6.629356620 > 86 M GPX3 -6.629356620 > 87 M GPX3 -2.615982450 > 88 M GPX3 -6.629356620 > 89 M GPX3 0.128743354 > 90 S GPX3 -6.629356620 > 91 E MAL -6.629356620 > 92 E MAL -4.825545452 > 93 E MAL -6.629356620 > 94 E MAL -6.629356620 > 95 E MAL -6.629356620 > 96 M MAL -0.419005364 > 97 M MAL -0.923667455 > 98 M MAL 6.629356620 > 99 M MAL 3.371740196 > 100 S MAL -6.629356620 > 101 N MGMT -6.629356620 > 102 E MGMT 1.115112556 > 103 M MGMT 4.030893797 > 104 S MGMT -6.629356620 > 105 N MLH1 -0.519875304 > 106 N MLH1 -1.352872084 > 107 E MLH1 -0.777864442 > 108 E MLH1 1.105073029 > 109 E MLH1 5.758699199 > 110 E MLH1 -1.498072236 > 111 S MLH1 -1.630362301 > 112 M MYOD1 -6.629356620 > 113 M MYOD1 6.629356620 > 114 M MYOD1 -6.629356620 > 115 M MYOD1 -6.629356620 > 116 R MYOD1 -6.629356620 > 117 R MYOD1 -6.629356620 > 118 S MYOD1 -6.629356620 > 119 S MYOD1 -6.629356620 > 120 S MYOD1 -4.645053781 > 121 N NELL1 -6.629356620 > 122 N NELL1 -5.536591557 > 123 N NELL1 -5.903856552 > 124 E NELL1 -6.629356620 > 125 E NELL1 -6.629356620 > 126 M NELL1 -6.629356620 > 127 S NELL1 -6.629356620 > 128 N OSMR -6.629356620 > 129 M OSMR 4.407821839 > 130 M OSMR 0.364604851 > 131 M OSMR -6.629356620 > 132 S OSMR -6.629356620 > 133 N PAX6 6.629356620 > 134 E PAX6 -3.401030959 > 135 M PAX6 -0.946878855 > 136 S PAX6 0.964721065 > 137 E PTGS2 -3.749795240 > 138 M PTGS2 -6.629356620 > 139 S PTGS2 -2.076356656 > 140 S PTGS2 -3.961164916 > 141 N RARB -4.611429173 > 142 E RARB -1.706166432 > 143 S RARB -3.697493231 > 144 N RASSF1A -1.505128642 > 145 E RASSF1A 0.808179628 > 146 E RASSF1A -6.629356620 > 147 E RASSF1A -0.694997778 > 148 M RASSF1A -0.332307577 > 149 S RASSF1A -6.629356620 > 150 S RASSF1A 6.629356620 > 151 N RPRM -4.023523466 > 152 E RPRM 0.443243995 > 153 S RPRM -6.629356620 > 154 S RPRM -4.019270038 > 155 E RSPOI -1.735307607 > 156 E RSPOI -1.296083205 > 157 M RSPOI -3.003752756 > 158 S RSPOI -3.156564936 > 159 S RSPOI -2.928871731 > 160 N SEPTIN9 -6.629356620 > 161 E SEPTIN9 -2.585469731 > 162 E SEPTIN9 -2.525798264 > 163 M SEPTIN9 6.629356620 > 164 R SEPTIN9 -3.071222253 > 165 S SEPTIN9 -6.629356620 > 166 M SFRP1 -1.426465815 > 167 R SFRP1 -6.629356620 > 168 S SFRP1 -2.348648751 > 169 S SFRP1 -6.629356620 > 170 S SFRP1 -2.304295273 > 171 N SFRP4 -2.315044901 > 172 E SFRP4 -2.940158139 > 173 M SFRP4 6.629356620 > 174 S SFRP4 -6.629356620 > 175 S SFRP4 6.629356620 > 176 N SFRP5 -6.629356620 > 177 E SFRP5 -5.833523393 > 178 E SFRP5 2.765666156 > 179 E SFRP5 2.707734922 > 180 E SFRP5 6.629356620 > 181 M SMAD4 -6.629356620 > 182 M SMAD4 -6.629356620 > 183 M SMAD4 -6.629356620 > 184 R SMAD4 -6.629356620 > 185 S SMAD4 -6.629356620 > 186 S SMAD4 -6.629356620 > 187 S SMAD4 -6.629356620 > 188 N SOCS3 -0.604614698 > 189 N SOCS3 0.097268646 > 190 E SOCS3 -1.505450218 > 191 E SOCS3 6.629356620 > 192 N SPARC -3.865639988 > 193 N SPARC -1.868782928 > 194 E SPARC 2.821046068 > 195 E SPARC 6.629356620 > 196 S SPARC -6.629356620 > 197 S SPARC 0.202017887 > 198 S SPARC 6.629356620 > 199 S SPARC 6.629356620 > 200 N TAC1 -1.528221578 > 201 M TAC1 6.629356620 > 202 M TAC1 6.629356620 > 203 R TAC1 -2.294267250 > 204 S TAC1 2.624594634 > 205 N TERT -2.985641232 > 206 E TERT 2.809747729 > 207 E TERT 6.629356620 > 208 E TERT -3.164404633 > 209 M TERT 6.629356620 > 210 M TERT -2.766881108 > 211 S TERT 0.875337372 > 212 S TERT 3.175095461 > 213 N TIMP3 -2.046729298 > 214 E TIMP3 -3.461408230 > 215 E TIMP3 -2.996720557 > 216 M TIMP3 -6.629356620 > 217 M TIMP3 -1.527333149 > 218 R TIMP3 -3.933657283 > 219 S TIMP3 -1.020144976 > 220 S TIMP3 -2.357112874 > 221 S TIMP3 0.806736362 > 222 M TMEFF2 -1.160275850 > 223 M TMEFF2 -2.712025806 > 224 R TMEFF2 -3.961478237 > 225 R TMEFF2 -6.510953714 > 226 S TMEFF2 -0.619555286 > 227 S TMEFF2 2.344341057 > 228 E WIF1 -6.629356620 > 229 E WIF1 -3.806114522 > 230 E WIF1 -2.318313158 > 231 M WIF1 1.102899897 > 232 M WIF1 6.629356620 > 233 M WIF1 -6.629356620 > 234 N WNT4 -6.629356620 > 235 E WNT4 -3.474027185 > 236 E WNT4 -6.629356620 > 237 S WNT4 -6.629356620 > 238 S WNT4 -6.629356620 > 239 E WRN -6.629356620 > 240 M WRN -4.148942985 > 241 S WRN -1.855994142 > 242 R WT1 -0.824982393 > 243 S WT1 1.236129501 > 244 S WT1 1.088540877 > > [[alternative HTML version deleted]] > > ______________________________________________ > [email protected] mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. ______________________________________________ [email protected] mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
