Leonardo, you don't have X11 installed and it no longer ships with OS X 10.9 - you need to get it from
http://xquartz.macosforge.org Cheers, Simon On Jul 23, 2014, at 9:25 PM, Leonardo Gama <leonardo.g...@usp.br> wrote: > Hi! > > I've just installed R on my OS X 10.9 and was trying to make > arrayQualityMetrics package work. I've installed it via the biocLite > Bioconductor script, and everything was apparently fine. But when I tried to > load the package, I've got an issue with the Cairo package... > > Then I tried to load only Cairo: > > > library("Cairo") > > Error : .onLoad failed in loadNamespace() for 'Cairo', details: > call: dyn.load(file, DLLpath = DLLpath, ...) > error: unable to load shared object > '/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so': > > dlopen(/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so, > 6): Library not loaded: /opt/X11/lib/libXrender.1.dylib > Referenced from: > /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so > Reason: image not found > Error: package or namespace load failed for ‘Cairo’ > > > traceback() > > 2: stop(gettextf("package or namespace load failed for %s", sQuote(package)), > call. = FALSE, domain = NA) > 1: library(Cairo) > > > Verified it version and dependencies: > > > packageDescription("Cairo") > > Package: Cairo > Version: 1.5-6 > Title: [...] > Author: Simon Urbanek <simon.urba...@r-project.org>, Jeffrey Horner > <jeff.hor...@vanderbilt.edu> > Maintainer: Simon Urbanek <simon.urba...@r-project.org> > Depends: R (>= 2.4.0) > Suggests: png > Enhances: FastRWeb > Description: [...] > SystemRequirements: cairo (>= 1.2 http://www.cairographics.org/) > URL: http://www.rforge.net/Cairo/ > Packaged: 2014-06-26 14:50:25 UTC; svnuser > NeedsCompilation: yes > Repository: CRAN > Date/Publication: 2014-06-26 17:15:22 > Built: R 3.1.0; x86_64-apple-darwin13.1.0; 2014-06-27 05:04:27 UTC; > unix > -- File: > /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/Meta/package.rds > > > Tried to update it and got another error/warning: > > > upgrade.packages("Cairo") > > Warning message: > In doTryCatch(return(expr), name, parentenv, handler) : > unable to load shared object > '/Library/Frameworks/R.framework/Resources/modules//R_X11.so': > dlopen(/Library/Frameworks/R.framework/Resources/modules//R_X11.so, 6): > Library not loaded: /opt/X11/lib/libSM.6.dylib > Referenced from: /Library/Frameworks/R.framework/Resources/modules//R_X11.so > Reason: image not found > > > traceback() > > No traceback available > > > And finally: > > > sessionInfo() > > R version 3.1.1 (2014-07-10) > Platform: x86_64-apple-darwin13.1.0 (64-bit) > > locale: > [1] C/UTF-8/C/C/C/C > > attached base packages: > [1] stats graphics grDevices utils datasets methods base > > loaded via a namespace (and not attached): > [1] tools_3.1.1 > > pack > packBits packageEvent packageSlot > packageStatus > package.skeleton packageHasNamespace packageSlot<- > packageVersion > packageDescription packageName packageStartupMessage > package_version > > > I've also verified the cairo.os file cited in the first error message, and it > was there: > > $ file > /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so > > /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so: > Mach-O 64-bit dynamically linked shared library x86_64 > > $ ls -lh > /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so > > -rwxrwxr-x 1 root admin 3.2M Jun 27 02:04 > /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Cairo/libs/Cairo.so > > > I have no idea of what's going wrong. Somebody could help me? > Thank you, and sorry for the bad English. > > -- > Leonardo Gama, acadêmico > Ciências Moleculares / Medicina > Universidade de São Paulo, Brasil ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
