Hi,
I have struggled recently with R crashing with the following error in various
contexts. It has occurred when running the R package RCytoscape, a package we
generated internally and when running the base system. I have seen that this
is an issue with the Mavericks OS
(http://citizen-statistician.org/2013/10/27/warning-mac-os-10-9-mavericks-and-r-dont-play-nicely/),
but I don't run Mavericks. I have tried reinstalling the latest R version
without any improvements and I am seeking a solution for this frustating
problem. The error and sessionInfo() are below.
Thank you very much for any suggestions to overcome this problem.
best wishes,
Chris
Here is the error:
*** caught segfault ***
address 0x2464943a08, cause 'memory not mapped'
Traceback:
1: .Call("gyroscope", ncol(Y), nrow(Y), t(Y), as.integer(as.numeric(l) -
1), as.character(lnames), as.integer(perms), as.numeric(coloring),
as.integer(useDensity), as.integer(showProfile), as.integer(showPatch))
2: gyro2(data)
Possible actions:
1: abort (with core dump, if enabled)
2: normal R exit
3: exit R without saving workspace
4: exit R saving workspace
> sessionInfo()
R version 3.0.2 (2013-09-25)
Platform: x86_64-apple-darwin10.8.0 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] gyroscope_0.9
>
Christopher Gregg, PhD.
New York Stem Cell Foundation-Robertson Investigator
Assistant Professor, Neurobiology and Anatomy
Adjunct Assistant Professor, Human Genetics
323 Wintrobe Bldg 530
University of Utah, School of Medicine
20 North 1900 East
Salt Lake City, Utah 84132-3401
phone: (801) 581-8212
fax: (801) 585-9736
------------------------------------
Gregg Lab Website:
www.neuro.utah.edu/labs/gregg/index.html<http://www.neuro.utah.edu/labs/gregg/index.html>
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