Hi, I have struggled recently with R crashing with the following error in various contexts. It has occurred when running the R package RCytoscape, a package we generated internally and when running the base system. I have seen that this is an issue with the Mavericks OS (http://citizen-statistician.org/2013/10/27/warning-mac-os-10-9-mavericks-and-r-dont-play-nicely/), but I don't run Mavericks. I have tried reinstalling the latest R version without any improvements and I am seeking a solution for this frustating problem. The error and sessionInfo() are below.
Thank you very much for any suggestions to overcome this problem. best wishes, Chris Here is the error: *** caught segfault *** address 0x2464943a08, cause 'memory not mapped' Traceback: 1: .Call("gyroscope", ncol(Y), nrow(Y), t(Y), as.integer(as.numeric(l) - 1), as.character(lnames), as.integer(perms), as.numeric(coloring), as.integer(useDensity), as.integer(showProfile), as.integer(showPatch)) 2: gyro2(data) Possible actions: 1: abort (with core dump, if enabled) 2: normal R exit 3: exit R without saving workspace 4: exit R saving workspace > sessionInfo() R version 3.0.2 (2013-09-25) Platform: x86_64-apple-darwin10.8.0 (64-bit) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] gyroscope_0.9 > Christopher Gregg, PhD. New York Stem Cell Foundation-Robertson Investigator Assistant Professor, Neurobiology and Anatomy Adjunct Assistant Professor, Human Genetics 323 Wintrobe Bldg 530 University of Utah, School of Medicine 20 North 1900 East Salt Lake City, Utah 84132-3401 phone: (801) 581-8212 fax: (801) 585-9736 ------------------------------------ Gregg Lab Website: www.neuro.utah.edu/labs/gregg/index.html<http://www.neuro.utah.edu/labs/gregg/index.html> [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.