Without knowing where you got bargraph.CI() I can't answer that part,
since it isn't part of base R, but the most likely cause is that you
did not specify the desired levels of your factor.
You can check with str().

Compare:

> testdata <- factor(c("a", "b", "a", "c", "b"))
> str(testdata)
 Factor w/ 3 levels "a","b","c": 1 2 1 3 2
>
> testdata <- factor(c("a", "b", "a", "c", "b"), levels=c("c", "b", "a"))
> str(testdata)
 Factor w/ 3 levels "c","b","a": 3 2 3 1 2

Sarah

On Wed, Dec 11, 2013 at 5:06 PM, Yuanzhi Li <yuanzhi...@usherbrooke.ca> wrote:
> hello,
>
> I had a problem with the function "bargraph.CI". "bargraph.CI" draws a
> figure according to the alphabet sequence of the factor used. For example, I
> have a factor with for levels "CK", "N5", "N10", "N15", but the bars appear
> in "CK","N10","N15","N5" order(alphabet sequence), but I want the bars to
> appear  "CK", "N5", "N10", "N15"(treat level sequence). Do you have any
> ideas to realize the goal?
>
> Thank you!
>
>
> Yuanzhi
>

-- 
Sarah Goslee
http://www.functionaldiversity.org

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