Hi everyone,
I am trying to install colorspace (needed as part of my favourite ggplot2)
on R v 2.7.0 running under ubuntu 7.04. The package is provided as source
files and the compilation fails as below.
I suspect this might be a problem with gcc v3/v4 incompatibility (or
anything else), but I don't really know how to resolve it. Any advice will
be appreciated - or perhaps somebody has got this package compiled and could
share the binaries?
Many thanks!
Mikhail
----
Mikhail Spivakov, PhD
European Bioinformatics Institute
European Molecular Biology Laboratory
Germany/UK
* Installing *source* package 'colorspace' ...
** libs
gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c colorspace.c -o
colorspace.o
In file included from colorspace.c:1:
/usr/share/R/include/R.h:28:20: error: stdlib.h: No such file or directory
/usr/share/R/include/R.h:29:19: error: stdio.h: No such file or directory
In file included from
/usr/lib/gcc/i486-linux-gnu/4.1.2/include/syslimits.h:7,
from /usr/lib/gcc/i486-linux-gnu/4.1.2/include/limits.h:11,
from /usr/share/R/include/R.h:30,
from colorspace.c:1:
/usr/lib/gcc/i486-linux-gnu/4.1.2/include/limits.h:122:61: error: limits.h:
No such file or directory
In file included from colorspace.c:1:
/usr/share/R/include/R.h:32:18: error: math.h: No such file or directory
/usr/share/R/include/R.h:33:19: error: errno.h: No such file or directory
In file included from /usr/share/R/include/R.h:50,
from colorspace.c:1:
/usr/share/R/include/R_ext/RS.h:24:39: error: string.h: No such file or
directory
In file included from colorspace.c:2:
/usr/share/R/include/Rinternals.h:770: error: expected declaration
specifiers or ‘...’ before ‘FILE’
/usr/share/R/include/Rinternals.h:773: error: expected declaration
specifiers or ‘...’ before ‘FILE’
colorspace.c: In function ‘gtrans’:
colorspace.c:28: warning: implicit declaration of function ‘pow’
colorspace.c:28: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘ftrans’:
colorspace.c:36: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘g’:
colorspace.c:92: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘LAB_to_XYZ’:
colorspace.c:106: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c:114: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c:117: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c:123: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘f’:
colorspace.c:132: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘XYZ_to_LAB’:
colorspace.c:144: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘XYZ_to_HLAB’:
colorspace.c:170: warning: implicit declaration of function ‘sqrt’
colorspace.c:170: warning: incompatible implicit declaration of built-in
function ‘sqrt’
colorspace.c: In function ‘LAB_to_polarLAB’:
colorspace.c:203: warning: implicit declaration of function ‘atan2’
colorspace.c:203: warning: incompatible implicit declaration of built-in
function ‘atan2’
colorspace.c:207: warning: incompatible implicit declaration of built-in
function ‘sqrt’
colorspace.c: In function ‘polarLAB_to_LAB’:
colorspace.c:216: warning: implicit declaration of function ‘cos’
colorspace.c:216: warning: incompatible implicit declaration of built-in
function ‘cos’
colorspace.c:217: warning: implicit declaration of function ‘sin’
colorspace.c:217: warning: incompatible implicit declaration of built-in
function ‘sin’
colorspace.c: In function ‘HSV_to_RGB’:
colorspace.c:272: warning: implicit declaration of function ‘floor’
colorspace.c:272: warning: incompatible implicit declaration of built-in
function ‘floor’
colorspace.c: In function ‘XYZ_to_LUV’:
colorspace.c:311: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘LUV_to_XYZ’:
colorspace.c:325: warning: incompatible implicit declaration of built-in
function ‘pow’
colorspace.c: In function ‘LUV_to_polarLUV’:
colorspace.c:342: warning: incompatible implicit declaration of built-in
function ‘sqrt’
colorspace.c:343: warning: incompatible implicit declaration of built-in
function ‘atan2’
colorspace.c: In function ‘polarLUV_to_LUV’:
colorspace.c:354: warning: incompatible implicit declaration of built-in
function ‘cos’
colorspace.c:355: warning: incompatible implicit declaration of built-in
function ‘sin’
colorspace.c: In function ‘CheckSpace’:
colorspace.c:373: warning: implicit declaration of function ‘strcmp’
colorspace.c: In function ‘CheckHex’:
colorspace.c:407: warning: implicit declaration of function ‘strlen’
colorspace.c:407: warning: incompatible implicit declaration of built-in
function ‘strlen’
colorspace.c:411: warning: implicit declaration of function ‘isxdigit’
colorspace.c: In function ‘hex_to_RGB’:
colorspace.c:1115: warning: passing argument 1 of ‘decodeHexStr’ discards
qualifiers from pointer target type
make: *** [colorspace.o] Error 1
ERROR: compilation failed for package 'colorspace'
** Removing '/home/mspivako/R/i486-pc-linux-gnu-library/2.7/colorspace'
The downloaded packages are in
/tmp/RtmpSxK3ea/downloaded_packages
Warning message:
In install.packages("colorspace") :
installation of package 'colorspace' had non-zero exit status
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