Dear R-Users,
I need a very fast and reliable database solution so I try to serialize a
data.frame (to binary data) and to store this data to an SQLite database.
This is what I tried to do:
library(RSQLite)
con <- dbDriver("SQLite")
db <- dbConnect(con, "test")
dbSendQuery(db, 'CREATE TABLE frames("simID" INT, "data" BLOB)')
data.bin <- serialize(iris, NULL, ascii = FALSE)
dbSendQuery(db, paste("INSERT INTO frames VALUES(1, X'", data.bin, "')", sep =
""))
data.bin2 <- dbGetQuery(db, "SELECT DATA FROM frames WHERE simID = 1")
data.bin2
data
1 58
So, only the first entry of data.bin is saved to the database. I tried to first
convert the binary data to raw data:
data.raw <- rawToChar(data.bin)
Error in rawToChar(data.bin) :
embedded nul in string:
'X\n\0\0\0\002\0\003\0\001\0\002\003\0\0\0\003\023\0\0\0\005\0\0\0\016\0\0\0\x96@\024ffffff@\023\x99\x99\x99\x99\x99\x9a@\022\xcc\xcc\xcc\xcc\xcc\xcd@\022ffffff@\024\0\0\0\0\0\0@\025\x99\x99\x99\x99\x99\x9a@\022ffffff@\024\0\0\0\0\0\0@\021\x99\x99\x99\x99\x99\x9a@\023\x99\x99\x99\x99\x99\x9a@\025\x99\x99\x99\x99\x99\x9a@\023333333@\023333333@\021333333@\027333333@\026\xcc\xcc\xcc\xcc\xcc\xcd@\025\x99\x99\x99\x99\x99\x9a@\024ffffff@\026\xcc\xcc\xcc\xcc\xcc\xcd@\024ffffff@\025\x99\x99\x99\x99\x99\x9a@\024ffffff@\022ffffff@\024ffffff@\023333333@\024\0\0\0\0\0\0@\024\0\0\0\0\0\0@\024\xcc\xcc\xcc\xcc\xcc\xcd@\024\xcc\xcc\xcc\xcc\xcc\xcd@\022\xcc\xcc\xcc\xcc\xcc\xcd@\023333333@\025\x99\x99\x99\x99\x99\x9a@\024\xcc\xcc\xcc\xcc\xcc\xcd@\026\0\0\0\0\0\0@\023\x99\x99\x99\x99\x99\x9a@\024\0\0\0\0\0\0@\026\0\0\0\0\0\0@\023\x99\x99\x99\x99\x99\x9a@\021\x99\x99\x99\x99\x99\x9a@\024ffffff@\024\0\0\0\0\0\0@\022\0\0\0\0\0\0@\021\x99\x99\x99\x99\x99\x9a@\024\0\0\0\0\!
0\0
I don't know what this error should tell me. Then I tried to use the ASCII
format
data.ascii <- serialize(iris, NULL, ascii = TRUE)
data.raw <- rawToChar(data.ascii)
dbSendQuery(db, "DELETE FROM frames")
dbSendQuery(db, paste("INSERT INTO frames VALUES(1, X'", data.raw, "')", sep =
""))
Error in sqliteExecStatement(conn, statement, ...) :
RS-DBI driver: (error in statement: unrecognized token: "X'A
This also does not work. It seems the driver does not deal that nicely with the
regular INSERT query for BLOB objects in SQLite. Then I used a simpler way:
dbSendQuery(db, "DELETE FROM frames")
dbSendQuery(db, "DROP TABLE frames")
dbSendQuery(db, 'CREATE TABLE frames("simID" INT, "data" TEXT DEFAULT NULL)')
dbSendQuery(db, paste("INSERT INTO frames VALUES(1, '", data.raw, "')", sep =
""))
data.bin2 <- dbGetQuery(db, "SELECT data FROM frames WHERE simID = 1")
Nice, that worked. Now I want to unserialize the data:
unserialize(data.bin2)
Error in unserialize(data.bin2) : 'connection' must be a connection
unserialize(data.bin2[1, 'data'])
Error in unserialize(data.bin2[1, "data"]) :
character vectors are no longer accepted by unserialize()
I feel a little stuck here, but I am very sure, that converting data.frames to
binary data and storing them to a database is not that unusual. So I hope
somebody has already done this and could give me the missing piece.
Best
Simon
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