Hi all,
I am a phylogenetic student, I'm running SH test to examine free (tree1) and
constrained (tree2) trees using R phangorn package. The outputs are like the
following and i'm confused how should i interpret them!!!
Trees ln L Diff ln L p-value
[1,] 1 -1422.921 0.00000 0.4952
[2,] 2 -1457.282 34.36085 0.0201
Why it gives us two p values? Would you please help me with that?
Regards,
Vahab
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