Dear R People:
I'm not sure if this is an R problem or a Centos 5 problem, but here it
goes:
I'm running Rstudio from a Centos 5 server. When I try to install packages
from a non-root account, I get the following:
> Sys.umask()[1] "22"> install.packages("maps")Installing package into
> /home/erin1/R/x86_64-unknown-linux-gnu-library/3.0
(as lib is unspecified)trying URL
'http://cran.rstudio.com/src/contrib/maps_2.3-2.tar.gz'Content type
'application/x-gzip' length 1426362 bytes (1.4 Mb)opened
URL==================================================downloaded 1.4 Mb
* installing *source* package maps ...** package maps successfully
unpacked and MD5 sums checked** libs** arch - gcc -std=gnu99 -g -O2
-I/usr/local/include -L/usr/local/lib64 Gmake.c -o GmakeGmake.c: In
function get_lh:
Gmake.c:111: warning: cast from pointer to integer of different
sizeGmake.c:113: warning: cast from pointer to integer of different
sizeGmake.c: In function main:Gmake.c:211: warning: cast from
pointer to integer of different sizeGmake.c:214: warning: cast from
pointer to integer of different sizeGmake.c:217: warning: cast from
pointer to integer of different sizeGmake.c:219: warning: cast from
pointer to integer of different sizeGmake.c:221: warning: cast from
pointer to integer of different sizeGmake.c:224: warning: cast from
pointer to integer of different sizeGmake.c:227: warning: cast from
pointer to integer of different sizegcc: error trying to exec 'as':
execvp: Permission deniedmake: *** [Gmake] Error 1ERROR: compilation
failed for package maps* removing
/home/erin1/R/x86_64-unknown-linux-gnu-library/3.0/mapsWarning in
install.packages :
installation of package maps had non-zero exit status
The downloaded source packages are in
/tmp/RtmpIF6S0R/downloaded_packages> sessionInfo()R version 3.0.1
(2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
LC_TIME=en_US.UTF-8
[4] LC_COLLATE=en_US.UTF-8 LC_MONETARY=en_US.UTF-8
LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8
LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] tools_3.0.1
>
I've changed the permissions, and updated the umask to 022.
Any help would be much appreciated.
Sincerely,
Erin
--
Erin Hodgess
Associate Professor
Department of Computer and Mathematical Sciences
University of Houston - Downtown
mailto: [email protected]
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