I make an example for the use of this package here:
http://max2.ese.u-psud.fr/epc/conservation/Girondot/Publications/Blog_r/Entrees/2013/2/26_Using_package_RNetCDF_with_SST.html

Sincerely
Marc Girondot

Le 12/04/13 17:39, Enhao Du a écrit :
Hi, I'm new to R. I have some daily soil moisture data for the year 1979 in 
netcdf format such as these
sm19790101.1.nc
sm19790102.1.nc
.
.
.
sm19791231.1.nc

I need to average a variable called "sm" to monthly resolution. I've done these

days = formatC(1:31, width=2, flag="0")
ncfiles = lapply(days, function(d){
     filename = paste("sm197901", d, ".1.nc", sep="")
     #print(filename)
     open.nc(filename)
})

to open the files in January. Questions is: how may I get the variable from each opened 
file. Rnetcdf package has the var.get.nc() that only read object of class 
"Netcdf" returned from open.nc(). Any help would be appreciated.

Enhao
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--
__________________________________________________________
Marc Girondot, Pr

Laboratoire Ecologie, Systématique et Evolution
Equipe de Conservation des Populations et des Communautés
CNRS, AgroParisTech et Université Paris-Sud 11 , UMR 8079
Bâtiment 362
91405 Orsay Cedex, France

Tel:  33 1 (0)1.69.15.72.30   Fax: 33 1 (0)1.69.15.73.53
e-mail: marc.giron...@u-psud.fr
Web: http://www.ese.u-psud.fr/epc/conservation/Marc.html
Skype: girondot

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