Hi Will, I think that save.image() is the way to go. Regarding the directory, its possible to pass arguments to an R script from the command line, or as long as the R script is in the directory you want the image saved in, just save it to the current working directory.
Cheers, Josh On Thu, Apr 4, 2013 at 7:18 AM, <will.ea...@gmx.net> wrote: > > Dear all, > > I would like to fully document an analysis in R including script, output > and > workspace data. To do this I currently run under Linux > > $ R CMD BATCH myscript.R > > This command combines and saves only the script commands and the output > ./myscript.Rout. To save the workspace, I have to explicitly specify the > path in the R file and apply save.image(...). > > How can I save the full workspace with the same naming scheme under the > same > path, e.g. ./myscript.RData similar to ./myscript.Rout? > > Note: R CMD BATCH myscript.R --save does not work. > > Best regards and thanks in advance, > > Will > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Joshua Wiley Ph.D. Student, Health Psychology University of California, Los Angeles http://joshuawiley.com/ Senior Analyst - Elkhart Group Ltd. http://elkhartgroup.com ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
