What went wrong? You cross-posted. Don't ask about bioconductor packages on R-help. --------------------------------------------------------------------------- Jeff Newmiller The ..... ..... Go Live... DCN:<jdnew...@dcn.davis.ca.us> Basics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/Batteries O.O#. #.O#. with /Software/Embedded Controllers) .OO#. .OO#. rocks...1k --------------------------------------------------------------------------- Sent from my phone. Please excuse my brevity.
array chip <arrayprof...@yahoo.com> wrote: >Hi, I am new to bioconductor, trying to install KEGGSOAP package, but >got warnings() when installing and error message when trying to load >the package, can anyone suggest what went wrong? > >many thanks > >John > > > >> source("http://bioconductor.org/biocLite.R") >Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help >> biocLite("KEGGSOAP") >BioC_mirror: http://bioconductor.org >Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15. >Installing package(s) 'KEGGSOAP' >trying URL >'http://bioconductor.org/packages/2.11/bioc/bin/windows/contrib/2.15/KEGGSOAP_1.32.0.zip' >Content type 'application/zip' length 69037 bytes (67 Kb) >opened URL >downloaded 67 Kb > >package ���KEGGSOAP��� successfully unpacked and MD5 sums checked > >The downloaded binary packages are in >�������������� >C:\Users\yzhang\AppData\Local\Temp\RtmpawAjwx\downloaded_packages >Warning message: >installed directory not writable, cannot update packages 'acepack', >'actuar', 'ada', 'ade4', 'ade4TkGUI', >�� 'agricolae', 'akima', 'ape', 'aplpack', 'arules', 'bitops', 'boot', >'Cairo', 'car', 'caTools', 'cba', >�� 'chron', 'class', 'clue', 'cluster', 'coda', 'colorspace', >'CompQuadForm', 'corpcor', 'DAAG', 'date', >�� 'deldir', 'descr', 'deSolve', 'devtools', 'digest', 'diptest', >'doBy', 'DoE.wrapper', 'e1071', 'effects', >�� 'ENmisc', 'epiR', 'eRm', 'evaluate', 'evd', 'FactoMineR', 'fArma', >'fAssets', 'fBasics', 'fdrtool', >�� 'fExoticOptions', 'fExtremes', 'fGarch', 'fields', 'flexclust', >'fMultivar', 'fNonlinear', 'fOptions', >�� 'forecast', 'foreign', 'fpc', 'fracdiff', 'fRegression', 'FrF2', >'FrF2.catlg128', 'fTrading', >�� 'fUnitRoots', 'gamlss', 'gamlss.data', 'gamlss.dist', 'gclus', >'gdata', 'geoR', 'GGally', 'ggm', >�� 'ggplot2', 'gmodels', 'gridBase', 'gWidgets', 'gWidgetstcltk', 'HH', >'Hmisc', 'httr', 'igraph', >�� 'igraph0', 'inline', 'ipred', 'isa2', 'JavaGD', 'JGR', 'kernlab', >'KernSmoot [... truncated] > > >> library(KEGGSOAP) >Loading required package: BiocGenerics > >Attaching package: ���BiocGenerics��� > >The following object(s) are masked from ���package:stats���: > >������ xtabs > >The following object(s) are masked from ���package:base���: > >������ anyDuplicated, cbind, colnames, duplicated, eval, Filter, Find, >get, intersect, lapply, Map, mapply, mget, order, paste, >������ pmax, pmax.int, pmin, pmin.int, Position, rbind, Reduce, >rep.int, rownames, sapply, setdiff, table, tapply, union, unique > >failed to load HTTP resource >Error : .onLoad failed in loadNamespace() for 'KEGGSOAP', details: >�� call: NULL >�� error: 1: failed to load HTTP resource > >Error: package/namespace load failed for ���KEGGSOAP��� > > >> sessionInfo() >R version 2.15.1 (2012-06-22) >Platform: x86_64-pc-mingw32/x64 (64-bit) > >locale: >[1] LC_COLLATE=English_United States.1252�� LC_CTYPE=English_United >States.1252���� >[3] LC_MONETARY=English_United States.1252 >LC_NUMERIC=C�������������������������������������������������� >[5] LC_TIME=English_United States.1252������ > >attached base packages: >[1] stats�������� graphics�� grDevices datasets�� utils�������� >methods���� base�������� > >other attached packages: >[1] BiocGenerics_0.4.0�� BiocInstaller_1.8.3 > >loaded via a namespace (and not attached): >[1] codetools_0.2-8 RCurl_1.91-1.1�� SSOAP_0.8-0�������� >tools_2.15.1������ XML_3.9-4.1�������� XMLSchema_0.7-2 > [[alternative HTML version deleted]] > > > >------------------------------------------------------------------------ > >______________________________________________ >R-help@r-project.org mailing list >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.