Thanks for replying. Apologies for not putting the code, I have not deviated
from that used on the website I linked to.
>Can you show the exact code you used please?
I am using:
#below is Species_1 etc
org <- read.table ("Organisms.S", header=TRUE, row.names=1)
#below is environmental variables
env<-read.table ("Environment.S, header=TRUE)
attach(env)
library(vegan)
cca.1<-(org~Temp+Water+etc)
cca.1
At this point I have noticed (this morning) that I should be getting the CCA
come up here, and this is working with test data but not my actual data
which is formatted in exactly the same way.
If I type:
cca(formula = org ~ Temp + Water+etc, data = org)
at this point, I get what looks like but (you're right) might not be an
output.
For the graph I was then trying to use:
cca1.plot <- plot(cca.1,choices=c(1,2))
at which point I get error messages.
>Also, not sure why you are
attaching anything
As I said, I'm quite new to R. It does so on the tutorial linked so had
assumed it was to do with being able to access the parameters Temp etc.
H
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