Hello all,
I'm new in R, and I have a data-frame like this (dput information below):
Specie Fooditem Occurrence Volume
1 Schizodon vegetal 1 0.05
2 Schizodon sediment 1 0.60
3 Schizodon vegetal 1 0.15
4 Schizodon alga 1 0.05
5 Schizodon sediment 1 0.90
6 Schizodon sediment 1 0.30
7 Schizodon sediment 1 0.90
8 Astyanax terrestrial_insect 1 0.10
9 Astyanax vegetal 1 0.85
10 Astyanax aquatical_insect 1 0.05
11 Astyanax vegetal 1 0.90
12 Astyanax un_insect 1 0.85
for each specie, I have to calculate a food item importance index, that is:
Fi x Vi / Sum (Fi x Vi)
Fi = percentual frequency of occurrence of a food item
Vi = percentual volume of a food item
So, using ddply (plyr) function, I was able to calculate the total
frequency of occurrence and total volume of each food item, using:
Frequency = ddply (dieta, c('Specie','Fooditem') , summarise,
Frequency = sum (Occurrence))
Volume = ddply (dieta, c('Specie','Fooditem') , summarise, Volume =
sum (Volume))
and calculate total frequency and total volume for a given specie:
TFrequency = ddply (Frequency, 'Specie' , summarise, TF = sum (Frequency))
TVolume = ddply (dieta, c('Specie') , summarise, Volume = sum (Volume))
but once they have different length, I could not use together to
create a percentage needed in my formula.
Any suggestions?
Thanks in advanced for help and attention,
Raoni
dput (diet)
structure(list(Specie = structure(c(2L, 2L, 2L, 2L, 2L, 2L, 2L,
1L, 1L, 1L, 1L, 1L), .Label = c("Astyanax", "Schizodon"), class = "factor"),
Fooditem = structure(c(6L, 3L, 6L, 1L, 3L, 3L, 3L, 4L, 6L,
2L, 6L, 5L), .Label = c("alga", "aquatical_insect", "sediment",
"terrestrial_insect", "un_insect", "vegetal"), class = "factor"),
Occurrence = c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L, 1L,
1L), Volume = c(0.05, 0.6, 0.15, 0.05, 0.9, 0.3, 0.9, 0.1,
0.85, 0.05, 0.9, 0.85)), .Names = c("Specie", "Fooditem",
"Occurrence", "Volume"), class = "data.frame", row.names = c(NA,
-12L))
sessionInfo()
R version 2.15.1 (2012-06-22)
Platform: i386-pc-mingw32/i386 (32-bit)
Windows XP
--
Raoni Rosa Rodrigues
Research Associate of Fish Transposition Center CTPeixes
Universidade Federal de Minas Gerais - UFMG
Brasil
rodrigues.ra...@gmail.com
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