Yes, Jessica, the practice -- of which I also have been and continue to be guilty -- does not really make a lot of sense. It usually doesn't affect estimation all that much, but it can certainly mess up inference. The proper approach is to use the proper approach: model it as left-censored data. The problem with that is:
1. It's complicated, and is beyond the statistical background of most folks who deal with such data -- it's a ubiquitous issue in science and engineering after all. 2. Typically, the LOD isn't: that is, there often is not a well defined value and that which is chosen is both arbitrary and inaccurate. What one often sees is an increasing loss of relative precision as one "approaches" the designated value. Modeling this effectively gets even more complicated. David Rocke and colleagues has published methodology on this, mostly in TECHNOMETRICS if memory serves. 3. So, as in other situations, we muddle along with rather crude statistical approaches and hope that they are adequate. Probably in most circumstances they are, but ... Cheers, Bert On Mon, Aug 13, 2012 at 1:15 AM, Jessica Streicher <j.streic...@micromata.de> wrote: > Tempting a use of let me google that for you.. > > Anyway, theres a package called Imputation. I myself used the zoo package. > There are probably lots of others since its a real common problem. > > They usually fill in places in you data that are designated as NA. > > I do not completely understand what you mean with detection limit. If you do > not have NAs, but rather some kind of threshold, i'd suggest going over the > data and filling any applicable values with NAs, then use the library of your > choice. I find that kind of weird though, if you haven't detected much you > haven't detected much. Its part of the data, why impute? > > On 11.08.2012, at 23:01, aynumazi wrote: > >> Hello, >> >> I'm trying to impute data below detection limit (with multiple detection >> limits) >> so i need just a method or a code for imputation and then extract the >> complete dataset to do the analyses. >> Is there any package which could do that simply as i'm a beginner in R >> >> Thank you >> >> >> >> -- >> View this message in context: >> http://r.789695.n4.nabble.com/Imputing-data-below-detection-limit-tp4640057.html >> Sent from the R help mailing list archive at Nabble.com. >> >> ______________________________________________ >> R-help@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Bert Gunter Genentech Nonclinical Biostatistics Internal Contact Info: Phone: 467-7374 Website: http://pharmadevelopment.roche.com/index/pdb/pdb-functional-groups/pdb-biostatistics/pdb-ncb-home.htm ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
