Hello James,
Thanks for the pointer, but Rredland is not maintained any more.
Take care
Oliver
On Thu, May 31, 2012 at 8:21 PM, J Toll <jct...@gmail.com> wrote:
> On Thu, May 31, 2012 at 6:40 AM, Oliver Ruebenacker <cur...@gmail.com> wrote:
>> Hello,
>>
>> Is there a convenient way to import RDF/OWL data into R?
>>
>> I'm interested in importing BioPAX/SBPAX data into R to make them
>> available for a wider audience. One exciting application would be to
>> use pathway data to explain differential microarray measurements by
>> identifying upstream nodes that are likely involved in causing the
>> differences. This could also be used to validate pathways or to
>> estimate concentrations or kinetic parameters.
>>
>> If no convenient method to import RDF/OWL exists, I would be happy
>> to take the lead in creating a light-weight R package based on rjava
>> and OpenRDF Sesame Rio that could query RDF/OWL data and turn the
>> results into data frames.
>
> Maybe take a look at:
>
> http://www.bioconductor.org/packages/2.6/bioc/vignettes/Rredland/inst/doc/Rredland.pdf
>
>
> James
--
Oliver Ruebenacker
Bioinformatics Consultant (http://www.knowomics.com/wiki/Oliver_Ruebenacker)
Knowomics, The Bioinformatics Network (http://www.knowomics.com)
SBPAX: Turning Bio Knowledge into Math Models (http://www.sbpax.org)
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