Hi
what is wrong with
heatmap(as.matrix(test), col=my.colors(25))
with test from your dput
Regards
Petr
> The heat map generated the correct result:
>
> library(gplots)
> arq <-read.table("l")
> matrix_l <-data.matrix(arq)
> my.colors <-
> colorRampPalette(c
>
("gray0","gray10","gray20","gray30","gray40","gray50","gray60","gray80","gray90","gray100"))
> heatmap.2(matrix_l,dendrogram="none", Rowv=NA, Colv=NA,
col=my.colors(256))
>
> --------------------------
>
> Now I have the following file with 5 data, similar to the above:
>
> RF00002 RF00013 RF00100 RF00381 RF00434 RF00453 RF00165
> RF00496 RF00497
> RF00014 RF00048 RF00234 RF00163 RF00008 RF00094 RF00032
> RF00028 RF00216
> RF00487 RF00209 RF00465 RF00485 RF00363 RF00366
> RF00002 63 7 5 7 17 12 14 5 23 3 56 14 72 84
> 15 64 20 0 1 8 6 65 3 4
> RF00013 45 7 4 6 17 12 14 5 23 3 56 12 60 84
> 15 64 20 0 0 2 2 65 3 4
> RF00100 22 1 5 3 2 9 0 0 0 0 5 0 16 8 1 0
> 0 0 0 0 0 26 2 3
> RF00381 63 7 5 13 17 11 3 5 18 3 56 14 33 12
> 2 15 4 18 12 25 11 69 3 4
> RF00434 2 0 0 3 17 11 14 5 23 3 55 12 59 84
> 15 64 20 0 0 0 0 40 1 3
> RF00453 3 1 0 2 16 12 13 3 7 0 45 12 42 78
> 15 53 20 0 0 0 0 33 2 0
> RF00165 0 0 0 2 10 1 14 1 7 0 44 12 38 68 13
> 48 20 0 0 0 0 18 0 0
> RF00496 0 0 0 0 0 0 1 5 6 0 0 0 4 2 0 0
> 0 0 0 0 0 0 0 0
> RF00497 0 0 0 3 10 0 12 5 23 3 40 8 37 77 15
> 64 20 0 0 0 0 20 0 0
> RF00014 0 0 0 0 0 0 0 0 8 3 6 0 0 0 0 0
> 0 0 0 0 0 0 0 0
> RF00048 3 1 0 3 17 10 14 5 23 3 56 12 59 83
> 15 64 20 0 0 0 0 52 3 3
> RF00234 62 7 5 6 17 12 14 5 23 3 56 14 70 84
> 15 64 20 0 0 0 1 65 3 4
> RF00163 63 7 5 7 17 12 14 5 23 3 56 14 75 84
> 15 64 21 6 1 10 9 65 3 4
> RF00008 3 1 0 3 17 12 14 5 23 3 56 12 58 84
> 15 64 20 0 0 0 0 52 3 2
> RF00094 0 0 0 0 0 1 11 0 1 0 0 0 34 73 15
> 49 20 0 0 0 0 12 0 0
> RF00032 0 0 0 3 10 1 14 5 23 3 56 12 43 80
> 15 64 20 0 0 0 0 21 0 0
> RF00028 63 7 5 13 17 12 14 5 23 3 56 14 75 84
> 15 64 30 23 14 25 20 85 3 4
> RF00216 63 7 5 13 17 12 14 5 23 3 56 14 75 84
> 15 64 28 23 14 25 20 85 3 4
> RF00487 63 7 5 13 17 12 14 5 23 3 56 14 75 84
> 15 64 28 20 14 25 16 83 3 4
> RF00209 50 7 5 3 2 2 0 0 0 0 1 2 26 4 0 0
> 1 0 8 25 5 28 3 3
> RF00465 59 7 5 10 7 11 0 0 10 3 11 2 32 9 1
> 3 6 15 5 14 20 63 3 4
> RF00485 63 7 5 13 17 12 14 5 23 3 56 14 75 84
> 15 64 26 17 14 25 19 85 3 4
> RF00363 5 3 0 3 10 1 1 5 20 3 50 12 44 24 5
> 5 0 0 0 0 0 42 3 3
> RF00366 8 2 1 4 14 9 13 5 23 3 52 12 51 68
> 12 8 0 0 0 0 0 48 3 4
>
> Now I have the following file with 5 data, similar to the above:
> Is represented by an array of 25x25 and 10x10 not like the previous
>
> when I give the command dput (arch) it returns me the following output:
>
> structure(list(RF00002 = c(63L, 45L, 22L, 63L, 2L, 3L, 0L, 0L,
> 0L, 0L, 3L, 62L, 63L, 3L, 0L, 0L, 63L, 63L, 63L, 50L, 59L, 63L,
> 5L, 8L), RF00013 = c(7L, 7L, 1L, 7L, 0L, 1L, 0L, 0L, 0L, 0L,
> 1L, 7L, 7L, 1L, 0L, 0L, 7L, 7L, 7L, 7L, 7L, 7L, 3L, 2L), RF00100 = c(5L,
> 4L, 5L, 5L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 5L, 5L, 0L, 0L, 0L, 5L,
> 5L, 5L, 5L, 5L, 5L, 0L, 1L), RF00381 = c(7L, 6L, 3L, 13L, 3L,
> 2L, 2L, 0L, 3L, 0L, 3L, 6L, 7L, 3L, 0L, 3L, 13L, 13L, 13L, 3L,
> 10L, 13L, 3L, 4L), RF00434 = c(17L, 17L, 2L, 17L, 17L, 16L, 10L,
> 0L, 10L, 0L, 17L, 17L, 17L, 17L, 0L, 10L, 17L, 17L, 17L, 2L,
> 7L, 17L, 10L, 14L), RF00453 = c(12L, 12L, 9L, 11L, 11L, 12L,
> 1L, 0L, 0L, 0L, 10L, 12L, 12L, 12L, 1L, 1L, 12L, 12L, 12L, 2L,
> 11L, 12L, 1L, 9L), RF00165 = c(14L, 14L, 0L, 3L, 14L, 13L, 14L,
> 1L, 12L, 0L, 14L, 14L, 14L, 14L, 11L, 14L, 14L, 14L, 14L, 0L,
> 0L, 14L, 1L, 13L), RF00496 = c(5L, 5L, 0L, 5L, 5L, 3L, 1L, 5L,
> 5L, 0L, 5L, 5L, 5L, 5L, 0L, 5L, 5L, 5L, 5L, 0L, 0L, 5L, 5L, 5L
> ), RF00497 = c(23L, 23L, 0L, 18L, 23L, 7L, 7L, 6L, 23L, 8L, 23L,
> 23L, 23L, 23L, 1L, 23L, 23L, 23L, 23L, 0L, 10L, 23L, 20L, 23L
> ), RF00014 = c(3L, 3L, 0L, 3L, 3L, 0L, 0L, 0L, 3L, 3L, 3L, 3L,
> 3L, 3L, 0L, 3L, 3L, 3L, 3L, 0L, 3L, 3L, 3L, 3L), RF00048 = c(56L,
> 56L, 5L, 56L, 55L, 45L, 44L, 0L, 40L, 6L, 56L, 56L, 56L, 56L,
> 0L, 56L, 56L, 56L, 56L, 1L, 11L, 56L, 50L, 52L), RF00234 = c(14L,
> 12L, 0L, 14L, 12L, 12L, 12L, 0L, 8L, 0L, 12L, 14L, 14L, 12L,
> 0L, 12L, 14L, 14L, 14L, 2L, 2L, 14L, 12L, 12L), RF00163 = c(72L,
> 60L, 16L, 33L, 59L, 42L, 38L, 4L, 37L, 0L, 59L, 70L, 75L, 58L,
> 34L, 43L, 75L, 75L, 75L, 26L, 32L, 75L, 44L, 51L), RF00008 = c(84L,
> 84L, 8L, 12L, 84L, 78L, 68L, 2L, 77L, 0L, 83L, 84L, 84L, 84L,
> 73L, 80L, 84L, 84L, 84L, 4L, 9L, 84L, 24L, 68L), RF00094 = c(15L,
> 15L, 1L, 2L, 15L, 15L, 13L, 0L, 15L, 0L, 15L, 15L, 15L, 15L,
> 15L, 15L, 15L, 15L, 15L, 0L, 1L, 15L, 5L, 12L), RF00032 = c(64L,
> 64L, 0L, 15L, 64L, 53L, 48L, 0L, 64L, 0L, 64L, 64L, 64L, 64L,
> 49L, 64L, 64L, 64L, 64L, 0L, 3L, 64L, 5L, 8L), RF00028 = c(20L,
> 20L, 0L, 4L, 20L, 20L, 20L, 0L, 20L, 0L, 20L, 20L, 21L, 20L,
> 20L, 20L, 30L, 28L, 28L, 1L, 6L, 26L, 0L, 0L), RF00216 = c(0L,
> 0L, 0L, 18L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 6L, 0L, 0L, 0L,
> 23L, 23L, 20L, 0L, 15L, 17L, 0L, 0L), RF00487 = c(1L, 0L, 0L,
> 12L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 0L, 1L, 0L, 0L, 0L, 14L, 14L,
> 14L, 8L, 5L, 14L, 0L, 0L), RF00209 = c(8L, 2L, 0L, 25L, 0L, 0L,
> 0L, 0L, 0L, 0L, 0L, 0L, 10L, 0L, 0L, 0L, 25L, 25L, 25L, 25L,
> 14L, 25L, 0L, 0L), RF00465 = c(6L, 2L, 0L, 11L, 0L, 0L, 0L, 0L,
> 0L, 0L, 0L, 1L, 9L, 0L, 0L, 0L, 20L, 20L, 16L, 5L, 20L, 19L,
> 0L, 0L), RF00485 = c(65L, 65L, 26L, 69L, 40L, 33L, 18L, 0L, 20L,
> 0L, 52L, 65L, 65L, 52L, 12L, 21L, 85L, 85L, 83L, 28L, 63L, 85L,
> 42L, 48L), RF00363 = c(3L, 3L, 2L, 3L, 1L, 2L, 0L, 0L, 0L, 0L,
> 3L, 3L, 3L, 3L, 0L, 0L, 3L, 3L, 3L, 3L, 3L, 3L, 3L, 3L), RF00366 = c(4L,
> 4L, 3L, 4L, 3L, 0L, 0L, 0L, 0L, 0L, 3L, 4L, 4L, 2L, 0L, 0L, 4L,
> 4L, 4L, 3L, 4L, 4L, 3L, 4L)), .Names = c("RF00002", "RF00013",
> "RF00100", "RF00381", "RF00434", "RF00453", "RF00165", "RF00496",
> "RF00497", "RF00014", "RF00048", "RF00234", "RF00163", "RF00008",
> "RF00094", "RF00032", "RF00028", "RF00216", "RF00487", "RF00209",
> "RF00465", "RF00485", "RF00363", "RF00366"), class = "data.frame",
row.names
> = c("RF00002",
> "RF00013", "RF00100", "RF00381", "RF00434", "RF00453", "RF00165",
> "RF00496", "RF00497", "RF00014", "RF00048", "RF00234", "RF00163",
> "RF00008", "RF00094", "RF00032", "RF00028", "RF00216", "RF00487",
> "RF00209", "RF00465", "RF00485", "RF00363", "RF00366"))
>
> but he is not in scale with the gray color I wanted, like he looks like
> this:
>
> http://r.789695.n4.nabble.com/file/n4621356/Captura_de_tela-14.png
>
> I wanted to do, that it generates histogram, stayed the count from 0 to
25
> (because I have 25 data) and the value of (0-100)
>
>
>
>
>
>
>
>
>
> --
> View this message in context: http://r.789695.n4.nabble.com/Matrix-
> heatmap-tp4619084p4621356.html
> Sent from the R help mailing list archive at Nabble.com.
>
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