Re: [R] Compiling RMySQL on Win7 64bits RS-DBI.c:1:0: sorry, unimplemented: 64-bit mode not compiled in

[Ben Rhelp]

Hi Uwe,

I tried removing D:\BenSave\Rtools\MinGW64\bin (and replacing it with 
D:\BenSave\Rtools\MinGW\bin) but the result is the same.

If I try to run "install.packages('RMySQL', type = 'source')" on my R 32bits 
instance I get the following which seems to be due to having a MySQL server 
64bits as expected.

any other suggestions?

thanks in advance,

Ben


install.packages('RMySQL', type = 'source')
--- Please select a CRAN mirror for use in this session ---
trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/RMySQL_0.9-3.tar.gz'
Content type 'application/x-gzip' length 165363 bytes (161 Kb)
opened URL
downloaded 161 Kb

* installing *source* package 'RMySQL' ...
** package 'RMySQL' successfully unpacked and MD5 sums checked
checking for $MYSQL_HOME... D:/MySQL/forR55
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture

gcc  -I"D:/BenSave/R/R-215~1.0/include" -DNDEBUG 
-I"D:/MySQL/forR55"/include         -O3 -Wall  -std=gnu99 -mtune=core2 
-c RS-DBI.c -o RS-DBI.o
gcc  -I"D:/BenSave/R/R-215~1.0/include" -DNDEBUG 
-I"D:/MySQL/forR55"/include         -O3 -Wall  -std=gnu99 -mtune=core2 
-c RS-MySQL.c -o RS-MySQL.o
gcc -shared -s -static-libgcc -o RMySQL.dll tmp.def RS-DBI.o RS-MySQL.o 
D:/MySQL/forR55/lib/opt/libmysql.lib -LD:/BenSave/R/R-215~1.0/bin/i386 -lR
RS-MySQL.o:RS-MySQL.c:(.text+0xba): undefined reference to 
`mysql_more_results@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x352): undefined reference to `mysql_init@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x36f): undefined reference to `mysql_options@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x38d): undefined reference to `mysql_options@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x3ab): undefined reference to `mysql_options@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x3e6): undefined reference to 
`mysql_real_connect@32'
RS-MySQL.o:RS-MySQL.c:(.text+0x44a): undefined reference to `mysql_close@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x5b8): undefined reference to `mysql_error@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x9c4): undefined reference to `mysql_close@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xa3d): undefined reference to 
`mysql_fetch_fields@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xa55): undefined reference to 
`mysql_field_count@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xd5b): undefined reference to 
`mysql_next_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xd85): undefined reference to `mysql_use_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xd93): undefined reference to 
`mysql_field_count@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xe7b): undefined reference to 
`mysql_affected_rows@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xf56): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xf73): undefined reference to 
`mysql_free_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xfd7): undefined reference to `mysql_query@8'
RS-MySQL.o:RS-MySQL.c:(.text+0xfea): undefined reference to `mysql_use_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0xffb): undefined reference to 
`mysql_field_count@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x109d): undefined reference to `mysql_error@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1146): undefined reference to 
`mysql_affected_rows@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x12bd): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x12d8): undefined reference to 
`mysql_fetch_lengths@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x154f): undefined reference to `mysql_errno@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x16e4): undefined reference to `mysql_errno@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x16f2): undefined reference to `mysql_error@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1766): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1775): undefined reference to 
`mysql_free_result@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1990): undefined reference to 
`mysql_get_client_info@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x1b84): undefined reference to 
`mysql_get_host_info@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1bae): undefined reference to 
`mysql_get_server_info@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1bde): undefined reference to 
`mysql_get_proto_info@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x1bf5): undefined reference to `mysql_thread_id@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x294a): undefined reference to `mysql_fetch_row@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x2977): undefined reference to `mysql_errno@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x2aca): undefined reference to 
`mysql_fetch_lengths@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x315c): undefined reference to `mysql_insert_id@4'
RS-MySQL.o:RS-MySQL.c:(.text+0x324d): undefined reference to 
`mysql_real_escape_string@16'
RS-MySQL.o:RS-MySQL.c:(.text+0x3317): undefined reference to 
`mysql_get_client_info@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x335d): undefined reference to 
`mysql_get_client_version@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x33ae): undefined reference to 
`mysql_server_init@12'
RS-MySQL.o:RS-MySQL.c:(.text+0x33b6): undefined reference to 
`mysql_get_client_version@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x33d7): undefined reference to 
`mysql_get_client_info@0'
RS-MySQL.o:RS-MySQL.c:(.text+0x3408): undefined reference to 
`mysql_server_end@0'
collect2: ld returned 1 exit status
ERROR: compilation failed for package 'RMySQL'
* removing 'D:/BenSave/R/R-2.15.0/library/RMySQL'

The downloaded source packages are in
        ‘C:\Users\BenSave\TempFolder\RtmpS8df20\downloaded_packages’
Warning messages:
1: running command 'D:/BenSave/R/R-2.15.0/bin/i386/R CMD INSTALL -l 
"D:/BenSave/R/R-2.15.0/library"   
C:\Users\BenSave\TempFolder\RtmpS8df20/downloaded_packages/RMySQL_0.9-3.tar.gz' 
had status 1 
2: In install.packages("RMySQL", type = "source") :
  installation of package ‘RMySQL’ had non-zero exit status





>________________________________
> From: Uwe Ligges <lig...@statistik.tu-dortmund.de>
>To: Ben Rhelp <benrh...@yahoo.co.uk> 
>Cc: "r-help@r-project.org" <r-help@r-project.org> 
>Sent: Tuesday, 24 April 2012, 18:22
>Subject: Re: [R] Compiling RMySQL on Win7 64bits RS-DBI.c:1:0: sorry, 
>unimplemented: 64-bit mode not compiled in
> 
>
>
>On 24.04.2012 16:40, Ben Rhelp wrote:
>> Hi,
>>
>> On a Win7 64 bit, I have installed:
>> *R-15.0 and I am running it in 64bits
>> *Rtools215.exe*MySQL 5.5.23 64bits
>>
>> My PATH start with 
>> D:\BenSave\Rtools\bin;D:\BenSave\Rtools\MinGW64\bin;D:\BenSave\R\R-2.15.0\bin;D:\BenSave\Rtools\MinGW\bin;D:\BenSave\Rtools\gcc-4.6.3\bin;
>
>
>What is D:\BenSave\Rtools\MinGW64\bin? Probably it needs to go out of 
>the way.
>
>Uwe Ligges
>
>>
>> Note that I place MinGW64\bin has I want the package in 64 bits, so just in 
>> case it helps...
>>
>>
>> To install RMySQL 64 bits, I then followed the steps described in 
>> http://stackoverflow.com/questions/4785933/adding-rmysql-package-to-r-fails, 
>> namely:
>>
>>     1. Install latest RTools from 
>> http://cran.r-project.org/bin/windows/Rtools/
>>     2. install MySQL or header and library files of mysql
>>     3. create or edit file C:\Program Files\R\R-2.15\etc\Renviron.site 
>> and add line like MYSQL_HOME=C:/mysql (path to your mysql files)
>>     4. copy libmysql.lib from mysql/lib to mysql/lib/opt to meet 
>> dependencies.
>>     5. copy libmysql.dll to C:\Program Files\R\R-2.15\bin directory.
>>     6. run install.packages('RMySQL',type='source') and wait while 
>> compilation will end.
>>
>>> install.packages('RMySQL', type = 'source')
>> --- Please select a CRAN mirror for use in this session ---
>> trying URL 'http://cran.ma.imperial.ac.uk/src/contrib/RMySQL_0.9-3.tar.gz'
>> Content type 'application/x-gzip' length 165363 bytes (161 Kb)
>> opened URL
>> downloaded 161 Kb
>>
>> * installing *source* package 'RMySQL' ...
>> ** package 'RMySQL' successfully unpacked and MD5 sums checked
>> checking for $MYSQL_HOME... D:/MySQL/forR55
>> ** libs
>> Warning: this package has a non-empty 'configure.win' file,
>> so building only the main architecture
>>
>> gcc -m64 -I"D:/BenSave/R/R-215~1.0/include" -DNDEBUG 
>> -I"D:/MySQL/forR55"/include    
>> -I"d:/RCompile/CRANpkg/extralibs64/local/include"     -O2 -Wall  
>> -std=gnu99 -mtune=core2 -c RS-DBI.c -o RS-DBI.o
>> RS-DBI.c:1:0: sorry, unimplemented: 64-bit mode not compiled in
>> make: *** [RS-DBI.o] Error 1
>> ERROR: compilation failed for package 'RMySQL'
>> * removing 'D:/BenSave/R/R-2.15.0/library/RMySQL'
>>
>> The downloaded source packages are in
>>         
>> ‘C:\Users\Bvinsonneau\TempFolder\RtmpwPJoVe\downloaded_packages’
>> Warning messages:
>> 1: running command 'D:/BenSave/R/R-2.15.0/bin/x64/R CMD INSTALL -l 
>> "D:/BenSave/R/R-2.15.0/library"   
>> C:\Users\BenSave\TempFolder\RtmpwPJoVe/downloaded_packages/RMySQL_0.9-3.tar.gz'
>>  had status 1
>> 2: In install.packages("RMySQL", type = "source") :
>>   installation of package ‘RMySQL’ had non-zero exit status
>>>
>>
>>
>>
>> I seems to have the same error than the reporter on
>>
>> http://r.789695.n4.nabble.com/Installing-RMySQL-64-bit-Windows-7-td4466352.html
>> and Prof Brian Ripley suggests that the reporter should re-read the the 
>> instructions in 'R Installation and
>> Administration'. I did so but no luck. I am not sure what I am missing.Â
>>
>> Does anyone have a suggestion?
>>
>> Regards,
>>
>> Ben
>>     [[alternative HTML version deleted]]
>>
>>
>>
>>
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
>
>
        [[alternative HTML version deleted]]


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