Hi, I am unable to install the package rJava. I tried doing what the output
suggests, but it doesn't help. How can I get R to find/recognize my Java
installation? I am running R-2.15.0.
waichler@snow> sudo R CMD javareconf
Java interpreter : /usr/bin/java
Java version : 1.6.0_22
Java home path : /usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre
Java compiler : /usr/bin/javac
Java headers gen.:
Java archive tool: /usr/bin/jar
Java library path:
$(JAVA_HOME)/lib/i386/client:$(JAVA_HOME)/lib/i386:$(JAVA_HOME)/../lib/i386:/usr/java/packages/lib/i386:/lib:/usr/lib
JNI linker flags : -L$(JAVA_HOME)/lib/i386/client -L$(JAVA_HOME)/lib/i386
-L$(JAVA_HOME)/../lib/i386 -L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm
JNI cpp flags :
Updating Java configuration in /usr/lib/R
Done.
> install.packages(c("rJava"), dependencies = T, repos =
> "http://cran.fhcrc.org";)
. . .
checking whether siglongjmp is declared... yes
checking Java support in R... present:
interpreter : '/usr/bin/java'
archiver : '/usr/bin/jar'
compiler : '/usr/bin/javac'
header prep.: ''
cpp flags : ''
java libs : '-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre/lib/i386/client
-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre/lib/i386
-L/usr/lib/jvm/java-1.6.0-openjdk-1.6.0.0/jre/../lib/i386
-L/usr/java/packages/lib/i386 -L/lib -L/usr/lib -ljvm'
configure: error: One or more Java configuration variables are not set.
Make sure R is configured with full Java support (including JDK). Run
R CMD javareconf
as root to add Java support to R.
If you don't have root privileges, run
R CMD javareconf -e
to set all Java-related variables and then install rJava.
ERROR: configuration failed for package ÆrJavaÇ
* removing Æ/usr/lib/R/library/rJavaÇ
Thanks,
Scott Waichler
Senior Research Scientist
Hydrology Group, Energy & Environment Directorate
Pacific Northwest National Laboratory
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
