Hi List,
I'm trying to install aroma.affymetrix, which depend on many packages, affyio
is one of them. The task is done on 32-bit Linux without problem. The same task
was done on Solaris 9 with R-2.5.1 without problem. Following is the error
message when installation affyio. I did try to put a file stdint.h I got from
the web in the path, but got more error messages.
Jun
[EMAIL PROTECTED] R# R CMD INSTALL affyio_1.6.1.tar.gz
* Installing to library '/apps/R-2.6.2/lib/R/library'
* Installing *source* package 'affyio' ...
creating cache ./config.cache
checking how to run the C preprocessor... grep: can't open conftest.out
cc -E
checking for main in -lz... no
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include
-I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c fread_functions.c -o
fread_functions.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include
-I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_abatch.c -o read_abatch.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include
-I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_bpmap.c -o read_bpmap.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include
-I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_cdf_xda.c -o
read_cdf_xda.o
read_cdf_xda.c: In function `isPM':
read_cdf_xda.c:614: warning: implicit declaration of function `toupper'
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include
-I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_cdffile2.c -o
read_cdffile2.o
gcc -std=gnu99 -I/apps/R-2.6.2/lib/R/include -I/apps/R-2.6.2/lib/R/include
-I/apps/mpich-1.2.7p1/include -fPIC -g -O2 -c read_celfile_generic.c -o
read_celfile_generic.o
read_celfile_generic.c:31:20: stdint.h: No such file or directory
*** Error code 1
make: Fatal error: Command failed for target `read_celfile_generic.o'
chmod: WARNING: can't access /apps/R-2.6.2/lib/R/library/affyio/libs/*
ERROR: compilation failed for package 'affyio'
** Removing '/apps/R-2.6.2/lib/R/library/affyio'
---------------------------------
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