Hi everybody, I have to run under Ubuntu a programs repeatedly with different arguments and I am using R just to generate the data files and call the external program.
basically, in my script I have inside a loop these two lines: command <- paste(<some constant or variable strings>,sep="") system(command,intern=T,wait=T) when I run this script, I get a number of warnings, like this one: 16: running command '~/LDhat22/ldconvert -seq ld/serca/serca-Trs.fas -freqcut 0.0 -missfreqcut 100.0 -sites 1 3687 -nous 6 > ld/serca/serca-Trs.out' had status 2 however, when I run the very same command at the bash prompt, everything seems fine (no complaint). in either cases, the output is the same and looks correct. So, may I just ignore these warnings or is there something I should fix? thank you in advance, Eric Elguero MIVEGEC IRD -CNRS - UM1 Montpellier - France ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
