This question seems more suited to the Bioconductor mailing list:
you'll get specialized (and very good) help if you post there.

Michael

On Thu, Mar 8, 2012 at 6:22 AM, Ekta Jain <ekta_j...@jubilantbiosys.com> wrote:
> Dear All,
> I have an exon array and did not find any differential gene expression 
> between two samples. I was looking to perform correlation analysis on the 
> same. Can anyone recommend any package that would do this for an affy exon 
> array?
>
> Will SAM analysis give me correlated genes?
>
> Thanks and regards,
> Ekta
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