An Sweave file, 'test.Rnw':
\documentclass{article}
\title{Sweave minimal}
\author{MK}
\begin{document}
\maketitle
We try Sweave:
<<1>>=
data(airquality)
summary(airquality)
x <- airquality[1, 1]
@
I try Sexpr: \Sexpr{x}
We plot:
\begin{center}
<<2, fig=TRUE, echo=FALSE >>=
boxplot(Ozone ~ Month, data = airquality)
@
\end{center}
\end{document}
I check the sessionInfo:
> sessionInfo()
R version 2.14.1 (2011-12-22)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] datasets splines utils stats graphics grDevices methods base
other attached packages:
[1] cacheSweave_0.6 stashR_0.3-4 filehash_2.2 concord_1.4-9
irr_0.83 lpSolve_5.6.6 ca_0.33 rgl_0.92.798
[9] vegan_2.0-2 permute_0.6-3 reshape_0.8.4 plyr_1.7.1
ggplot2_0.9.0 doBy_4.5.2 snow_0.3-8
lme4_0.999375-42
[17] Matrix_1.0-3 lattice_0.20-0 multcomp_1.2-10
mvtnorm_0.9-9992 R2HTML_2.2 BiocInstaller_1.2.1 ctv_0.7-4
sos_1.3-1
[25] brew_1.0-6 Hmisc_3.9-2 survival_2.36-12 MASS_7.3-17
loaded via a namespace (and not attached):
[1] car_2.0-12 cluster_1.14.2 colorspace_1.1-1 dichromat_1.2-4
digest_0.5.1 grid_2.14.1 memoise_0.1 munsell_0.3
nlme_3.1-103
[10] proto_0.3-9.2 RColorBrewer_1.0-5 reshape2_1.2.1 scales_0.1.0
stats4_2.14.1 stringr_0.6 tools_2.14.1
and run Sweave:
> Sweave(file = 'test.Rnw')
Writing to file test.tex
Processing code chunks with options ...
1 : echo keep.source term verbatim (label = 1)
2 : keep.source term verbatim pdf (label = 2)
You can now run (pdf)latex on test.tex
It works as it should except for \Sexpr
\documentclass{article}
\title{Sweave minimmal}
\author{MK}
\usepackage{Sweave}
\begin{document}
\maketitle
We try Sweave:
\begin{Schunk}
\begin{Sinput}
> data(airquality)
> summary(airquality)
\end{Sinput}
\begin{Soutput}
Ozone Solar.R Wind Temp Month
Day
Min. : 1.0 Min. : 7 Min. : 1.70 Min. :56.0 Min. :5.00
Min. : 1.0
1st Qu.: 18.0 1st Qu.:116 1st Qu.: 7.40 1st Qu.:72.0 1st Qu.:6.00
1st Qu.: 8.0
Median : 31.5 Median :205 Median : 9.70 Median :79.0 Median :7.00
Median :16.0
Mean : 42.1 Mean :186 Mean : 9.96 Mean :77.9 Mean :6.99
Mean :15.8
3rd Qu.: 63.2 3rd Qu.:259 3rd Qu.:11.50 3rd Qu.:85.0 3rd Qu.:8.00
3rd Qu.:23.0
Max. :168.0 Max. :334 Max. :20.70 Max. :97.0 Max. :9.00
Max. :31.0
NA's : 37.0 NA's : 7
\end{Soutput}
\begin{Sinput}
> x <- airquality[1, 1]
\end{Sinput}
\end{Schunk}
We try Sexpr: \Sexpr{x}
We plot:
\begin{center}
\includegraphics{test-2}
\end{center}
\end{document}
The beginning of the .log file:
This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011) (format=pdflatex
2012.2.4) 23 FEB 2012 18:19
entering extended mode
\write18 enabled.
%&-line parsing enabled.
**test.tex
(./test.tex
LaTeX2e <2011/06/27>
Any thought? Please CC me when replying.
Michael Kubovy
[[alternative HTML version deleted]]
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