Thanks, that lets me move to the next step in figuring out what's wrong with my document :) Funny enough that's not the first problem I've had with Sweave and non-ascii characters.
Peter On Thu, Oct 13, 2011 at 7:30 PM, Yihui Xie <x...@yihui.name> wrote: > OK, that is really helpful for diagnosis. In line 436 of your tex > file, there is an NA, but it should really be this: > > }% this brace ends the effect of ‘include external’ > > So the reason for LaTeX failure was this missing bracket }. And the > reason for R to output NA here is most likely to be that in the LaTeX > comment here, there are curly quotes, which are not ASCII characters. > To solve the problem, you can either delete these non-ASCII > characters, or tell Sweave that your encoding is not latin1, but UTF8. > The latter way may not be directly possible, and this is why I brought > up the issue to pgfSweave developers: > https://github.com/cameronbracken/pgfSweave/issues/34 > > Regards, > Yihui > -- > Yihui Xie <xieyi...@gmail.com> > Phone: 515-294-2465 Web: http://yihui.name > Department of Statistics, Iowa State University > 2215 Snedecor Hall, Ames, IA > > > > On Thu, Oct 13, 2011 at 8:34 PM, Peter Meilstrup > <peter.meilst...@gmail.com> wrote: >> Sure, here's the generated .tex file: >> http://pastebin.com/b9fTsr0h >> >> Peter >> >> On Thu, Oct 13, 2011 at 6:14 PM, Yihui Xie <x...@yihui.name> wrote: >>> Seems to be weird. I can run the example smoothly under Ubuntu with R >>> 2.13.2. Could you also post your .tex file? >>> >>> Regards, >>> Yihui >>> -- >>> Yihui Xie <xieyi...@gmail.com> >>> Phone: 515-294-2465 Web: http://yihui.name >>> Department of Statistics, Iowa State University >>> 2215 Snedecor Hall, Ames, IA >>> >>> >>> >>> On Thu, Oct 13, 2011 at 7:01 PM, Peter Meilstrup >>> <peter.meilst...@gmail.com> wrote: >>>> I'm trying to get pgfSweave up and running. Hopefully I can get it >>>> working from within LyX, but first I'm just trying to get the simplest >>>> possible thing (compiling one of the example files in the pgfSweave >>>> package) to work. I'm using the example that comes in the pgfSweave >>>> package unmodified, but for reference I copied it to: >>>> >>>> http://pastebin.com/tW4RL6fs >>>> >>>> Configuration: >>>> R version 2.13.1 on OS X (intel) 10.5.8 >>>> pgfSweave package version 1.2.1 >>>> tikzDevice version 0.6.1 >>>> MacTeX 2011 installed >>>> tikz/pgf package version 2.10 >>>> >>>> Here is what I tried; I copied the file pgfSweave-example.Rnw into my >>>> working directory, created a "cache" dir and ran: >>>> >>>>> require("pgfSweave") >>>>> pgfSweave("pgfSweave-example.Rnw") >>>> >>>> This did some computation and then complained about a missing bracket: >>>> >>>> ! Missing } inserted. >>>> <inserted text> >>>> } >>>> l.439 \end{figure} >>>> >>>> After I dismissed this, it seemed to fail with various errors. >>>> >>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1 >>>> Error in tools::texi2dvi(paste(fn, "tex", sep = "."), pdf = pdf, ...) : >>>> Running 'texi2dvi' on 'pgfSweave-example.tex' failed. >>>> LaTeX errors: >>>> ! Package tikz Warning: Some images are not up-to-date and need to be >>>> generated >>>> . [1 >>>> >>>> Rerunning pgfSweave led to the same errors. >>>> The process created a .pdf file, but in place of a figure it has the >>>> notice: >>>> >>>> "[[ Image Discarded Due To ‘/tikz/external/mode=list and make’ ]] NA " >>>> >>>> Upon inspecting the log file I found this notice: >>>> >>>> ===== mode=`list and make': Use 'make -f pgfSweave-example.makefile' to >>>> generat >>>> e all images. Then, re-run (pdf)latex pgfSweave-example. ===== >>>> >>>> I tried following this instruction, but it also produced an error: >>>> >>>> bayanus-2:writing peter$ make -f pgfSweave-example.makefile >>>> pdflatex -halt-on-error -interaction=batchmode -jobname >>>> "pgfSweave-example-boxplot" >>>> "\def\tikzexternalrealjob{pgfSweave-example}\input{pgfSweave-example}" >>>> This is pdfTeX, Version 3.1415926-2.3-1.40.12 (TeX Live 2011) >>>> restricted \write18 enabled. >>>> entering extended mode >>>> make: *** [pgfSweave-example-boxplot.pdf] Error 1 >>>> >>>> I put the full R transcript at http://pastebin.com/aZECxKyP in case >>>> that contains additional useful information. >>>> I also put the contents of pgfSweave-example.log at >>>> http://pastebin.com/LzZW1z3R . >>>> Also pgfSweave-example-boxplot.log at http://pastebin.com/AF3TCCEK . >>>> >>>> What's going wrong? >>>> Cheers, >>>> Peter >>>> >>>> ______________________________________________ >>>> R-help@r-project.org mailing list >>>> https://stat.ethz.ch/mailman/listinfo/r-help >>>> PLEASE do read the posting guide >>>> http://www.R-project.org/posting-guide.html >>>> and provide commented, minimal, self-contained, reproducible code. >>>> >>> >> > ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
