Hi, ?p.adjust
Christoph 2011/10/12 Cristina Ramalho <cristina.rama...@grs.uwa.edu.au> > Hi all, > > This is probably a very simple question but I cannot figure out how to do > it. I run the fourthcorner method with my data and would like to adjust the > p values for multiple comparisons using Holm correction. When I run the > fourthcorner I obtain the results in yellow. What do I need to do to be > able > to aply the Holm correction to those p values? > > > library(ade4) > > four1 <- fourthcorner(tabR, tabL, tabQ, modeltype = 1, nrepet = 999, tr01 > = FALSE) > > summary(four1) > Fourth-corner Statistics > Permutation method 1 ( 999 permutations) > --- > > Var. R Var. Q Stat. Value Prob. > RABINT / SPAN r -0.0478943 0.038 * > RABINT / TREE r 0 1.000 > RABINT / SHRU r 0 1.000 > RABINT / HERB r 0.0261879 0.340 > RABINT / SEDG r -0.0320345 0.316 > RABINT / GRAS r 0.0124263 0.399 > > Thank you in advance for your help, > > Regards, > > C. > > -- > Cristina E. Ramalho > PhD Candidate > MSc in GIS > > Ecosystem Restoration & Intervention Ecology Research Group > School of Plant Biology (M090) > The University of Western Australia > 35 Stirling Highway, Crawley WA 6009 Perth, Australia > Phone: +61 (08) 6488 4655; Fax: +61 (08) 6488 7461 > www.plants.uwa.edu.au/research/ecosystem_restoration > > --------------------------------------------------------------------------------------------------- > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html> > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
