Hi Sandeep, I am not entirely sure about this but you might be interested in using ‘clValid’ package. In which Biological measures seems to be good option to map function with GO terms. I haven't used it myself.
Neetika On Tue, Sep 13, 2011 at 1:21 PM, Sandeep Amberkar <ssamber...@gmail.com>wrote: > Dear All, > > I need to fetch GO ontologies for Homo sapiens with their mappings to > corresponding Uniprot identifiers. I would be using this information to > compare result from a clustering algorithm with existing protein complexes. > This would be a test to check how the clustering algorithm accurately > captures GO terms with respect to the known protein complexes. Can anyone > suggest a simple workflow with the requisite packages? I am trying to find > out to fetch GO ontologies for homo sapiens with bioconductor but most > packages are designed for enrichment analysis. Am I missing something here? > Any help would be greatly appreciated. > > Thanks a lot in advance. > > > -- > Warm Regards, > Sandeep Amberkar > BioQuant,BQ26, > Im Neuenheimer Feld 267, > D-69120,Heidelberg > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]]
______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
