On Sep 11, 2011, at 5:38 AM, anand m t wrote:
Hi all..
I'm very new R, and i'm analyzing microarray data using Bioconductor..
Recently i was given microarray data to analyze. The problem is
whenever i
run MAS5 presence calls algorithm,
it throws an error saying NA/NaN/Inf in foreign function. How do i
remove
such NA/NaN/Inf's ??
I tried na.omit(dataframe) but stil problem exists.
dimension of matrix (data) is 35556 7.
data.mas5calls=mas5calls(data)
Getting probe level data...
Computing p-values
Error in FUN(1:6[[1L]], ...) :
NA/NaN/Inf in foreign function call (arg 2)
Besides the possibility that your data has NAs there is the possibilty
that the authors of whatever package has that function did not
anticipate some negative values or some other condition that your data
led to. Maybe the "foreign function", i.e. not 'mas5calls' tried to
take the log of 0 or some such.
It's not possible to saymuch more given the vagueness of your
question. This is also not the Bioconductor mailing list.
--
David Winsemius, MD
West Hartford, CT
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