Has anyone got SSOAP working on anything besides KEGG? I just tried another 3 SOAP servers. Both the WSDL and constructing the .SOAP call. Again the perl and ruby interface worked without any hitches.
Paul > library(SSOAP) > massBank<-processWSDL("http://www.massbank.jp/api/services/MassBankAPI?wsdl") Error in parse(text = paste(txt, collapse = "\n")) : <text>:1:29: unexpected input 1: function(x, ..., obj = new( ‚ ^ In addition: Warning message: In processWSDL("http://www.massbank.jp/api/services/MassBankAPI?wsdl") : Ignoring additional <service><port> ... elements > > metlin<-processWSDL("http://metlin.scripps.edu/soap/metlin.wsdl") Error in parse(text = paste(txt, collapse = "\n")) : <text>:1:29: unexpected input 1: function(x, ..., obj = new( ‚ ^ > pubchem<-processWSDL("http://pubchem.ncbi.nlm.nih.gov/pug_soap/pug_soap.cgi?wsdl") Error in parse(text = paste(txt, collapse = "\n")) : <text>:1:29: unexpected input 1: function(x, ..., obj = new( ‚ ^ On 20 Jul 2011, at 01:54, Benton, Paul wrote: > Dear all, > > I've been trying on and off for the past few months to get SSOAP to work with > chemspider. First I tried the WSDL file: > > cs<-processWSDL("http://www.chemspider.com/MassSpecAPI.asmx?WSDL") > Error in parse(text = paste(txt, collapse = "\n")) : > <text>:1:29: unexpected input > 1: function(x, ..., obj = new( ‚ > ^ > In addition: Warning message: > In processWSDL("http://www.chemspider.com/MassSpecAPI.asmx?WSDL") : > Ignoring additional <service><port> ... elements > > Next I've tried using just the pure .SOAP to call the database. > > s <- SOAPServer("http://www.chemspider.com/MassSpecAPI.asmx") > csid<- .SOAP(s, "SearchByMass2", mass=89.04767, range=0.01, > action = I("http://www.chemspider.com/SearchByMass2"), > xmlns = c("http://www.chemspider.com"), .opts = list(verbose = TRUE)) > > This seems to work and gives back a result. However, this result isn't the > right result. It's seems to have converted the mass into 0. When I run the > similar program in perl I get the correct id's. So this isn't a server side > problem but SSOAP. Any thoughts or suggestions on other packages to use? > Further infomation about the SeachByMass2 method and it's xml that it's > expecting. > http://www.chemspider.com/MassSpecAPI.asmx?op=SearchByMass2 > > Cheers, > > > Paul > > > PS Placing a fake error in the .SOAP code I can look at the xml it's sending > to the server: > Browse[1]> doc > <?xml version="1.0"?> > <SOAP-ENV:Envelope xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/" > xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/" > xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" > xmlns:xsd="http://www.w3.org/2001/XMLSchema" > SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"> > <SOAP-ENV:Body> > <ns:SearchByMass2 xmlns:ns="http://www.chemspider.com"> > <ns:mass>89.04767</ns:mass> > <ns:range>0.01</ns:range> > </ns:SearchByMass2> > </SOAP-ENV:Body> > </SOAP-ENV:Envelope> ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.