R CMD check tells me
* checking R code for possible problems ... NOTE
agexact.fit.rds: ... may be used in an incorrect context: ‘optim(init,
agfitfn, ...)’
Warning: <anonymous>: ... may be used in an incorrect context: ‘optim(init,
agfitfn, ...)’
Can anyone tell me what this message means? My searches haven't turned
up anything useful. This is with R 2.7 and 2.9.
The message appears to be referring to a section of code whose
highlights are
agfitfn <- function(beta) {
r <- .C("agexactrds", iter= as.integer(control$iter.max),
as.integer(n),
as.integer(nvar), sstart, sstop,
sstat,
x= x[sorted,],
sextra,
as.integer(length(response.prob)),
as.double(response.prob),
as.double(alpha),
as.double(offset[sorted] - mean(offset)),
newstrat,
means = double(nvar),
coef= as.double(beta),
u = double(nvar),
imat= double(nvar*nvar), loglik=double(2),
flag=integer(1),
double(2*nvar*nvar +nvar*4 + n),
integer(2*n),
as.double(control$eps),
as.double(control$toler.chol),
sctest=double(1),
as.integer(length(debugfile)),
as.character(debugfile),
as.integer(1), # dumb mode
PACKAGE="survivalrds" )
- r$loglik[2]
}
r <- optim(init, agfitfn, ...)
return(r)
All of this is in the body of
agexact.fit.rds <- function([stuff] {
[more stuff]
}
Thanks.
Ross
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
