I get something entirely different when I execute that input command
with the attached file:
This is what I see as the first 14 lines for a displayed value for dfa:
> dfa
V7 V8 V9 V10
1 0 1 G `
2 0 1 T a
3 0 1 C a
4 0 1 A a
5 0 1 G _
6 0 1 G Z
7 0 1 C ^
8 0 1 C \\
9 0 1 A Z
10 0 1 T a
11 0 1 g ^
12 0 1 A \\
13 0 1 C _
14 0 1 G a
If this is different than what you see when you type dfa after input
of that file in that manner then you should consider alternative
methods of communicating an unambiguous representation of your dfa
object.... as I have detailed in prior private messages.
--
David.
On Jul 8, 2011, at 6:10 PM, Bansal, Vikas wrote:
Dear all,
I am really sorry for not giving the input file because in my mail,I
did not explain my problem in a best way.
I have a file that is summary.txt(I have attached it) .we can read
this file using-
dfa=read.table("summar.txt",fill=T,colClasses = "character",header=T)
In V10 column I have ASCII values which I converted into decimal
numbers using this code-
dfa$V10=lapply(dfa[,4], function(c) as.numeric(charToRaw(c)))
Now I have a dataframe dfa with these columns something like this-
V7 V8
V9 V10
0 1
G 82
0 1 CGT
c(90, 92, 96)
0 1
GA c(78, 92)
0 1 GAG
c(90, 92, 92)
0 1
G 88
0 1
A 96
0 1 ATT
c(90, 96, 92)
0 1
T 94
0 1
C 97
the values in column V10 corresponds to A,C,G T in column V9.I want
only those whose score is more than 91.so output of above should be-
V7 V8
V9 V10
0 1 GT
c(90, 92, 96)
0 1 A
c(78, 92)
0 1 AG
c(90, 92, 92)
0 1
A 96
0 1 TT
c(90, 96, 92)
0 1
T 94
0 1
C 97
Can you please tell me the solution.
Thanking you,
Warm Regards
Vikas Bansal
Msc Bioinformatics
Kings College
London<summary.txt>______________________________________________
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
David Winsemius, MD
West Hartford, CT
______________________________________________
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
