INstalling of "RSQLite" was successful.
in R:
> packageVersion("RSQLite")
[1] '0.9.4'
When I try to install "sqldf", I found the following errors:
> install.packages("sqldf")
Installing package(s) into '/house/homedirs/c/cdu/library/'
(as 'lib' is unspecified)
trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/sqldf_0.4-0.tar.gz'
Content type 'application/x-gzip' length 19920 bytes (19 Kb)
opened URL
==================================================
downloaded 19 Kb
*ERROR: failed to lock directory '/house/homedirs/c/cdu/library' for
modifying
Try removing '/house/homedirs/c/cdu/library/00LOCK'
*
The downloaded packages are in
'/tmp/RtmpszmT38/downloaded_packages'
Warning message:
In install.packages("sqldf") :
installation of package 'sqldf' had non-zero exit status
When I try to remove the */house/homedirs/c/cdu/library/00LOCK'* by rm -r
00LOCK,
I got the following errors:
cdu@nuuk:~/library$ rm -r 00LOCK
*rm: cannot remove `00LOCK/RSQLite/libs/.nfs00000001301e52e000000004':
Device or resource busy*
Not known what happened.
Gabor, do you have any idea?
Thanks!
On Wed, Jun 22, 2011 at 3:24 PM, Changbin Du <changb...@gmail.com> wrote:
> I will try this first.
>
> Thanks, Gabor!
>
>
>
>
> On Wed, Jun 22, 2011 at 3:15 PM, Gabor Grothendieck <
> ggrothendi...@gmail.com> wrote:
>
>> On Wed, Jun 22, 2011 at 6:10 PM, Changbin Du <changb...@gmail.com> wrote:
>> > My R is 2.12.0.
>> >
>> >> R.version.string
>> > [1] "R version 2.12.0 (2010-10-15)"
>> >> packageVersion("RSQLite")
>> > [1] '0.8.0'
>> >> packageVersion("sqldf")
>> > [1] '0.3.5'
>> >
>> > So it seems I have to update or install the 2.13.0 version in my linux
>> > machine.
>> >
>>
>> R 2.12 might work but you should certainly update your packages.
>>
>> --
>> Statistics & Software Consulting
>> GKX Group, GKX Associates Inc.
>> tel: 1-877-GKX-GROUP
>> email: ggrothendieck at gmail.com
>>
>
>
>
> --
> Sincerely,
> Changbin
> --
>
> Changbin Du
> DOE Joint Genome Institute
> Bldg 400 Rm 457
> 2800 Mitchell Dr
> Walnut Creet, CA 94598
> Phone: 925-927-2856
>
>
>
--
Sincerely,
Changbin
--
Changbin Du
DOE Joint Genome Institute
Bldg 400 Rm 457
2800 Mitchell Dr
Walnut Creet, CA 94598
Phone: 925-927-2856
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
