On Thu, 16 Jun 2011, Joel wrote:

Found what was wrong with my code

Please follow the posting guide, and give the context asked for there.

changed:
inFile <- file('gwas_data_chr10.gen')
to:
inFile <- file('gwas_data_chr10.gen','r')

Dunno why its important but it is :P

You didn't open the file, so re-read it from the beginning every time.

Did you remember to close() it?

--
Brian D. Ripley,                  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595

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